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hammerlab / guacamole

Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly
Apache License 2.0
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minor thing: consider changing `--quiet` to indicate performance implications #544

Closed timodonnell closed 8 years ago

timodonnell commented 8 years ago 
  @Args4JOption(
    name = "--quiet",
    aliases = Array("-q"),
    usage = "Whether to compute additional statistics about the partitioned reads (default: false).",
    handler = classOf[BooleanOptionHandler]
  )
  var quiet: Boolean = false

If seems to be a substantial performance difference so may want to make the default not to do that computation and then have an arg like --partitioning-debug-info to turn it on. --quiet to me implies it just affects what gets printed not what gets computed.