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hammerlab / guacamole

Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly
Apache License 2.0
84 stars 21 forks source link

rm ParRegArgs from ReadSets args #596

Closed ryan-williams closed 8 years ago

ryan-williams commented 8 years ago

I have a use case (standalone partition-loci command) that wants ReadSets args but not PartitionedRegionsArgs; they should be separate and mixed in closer to the leaves of the hierarchy.

coveralls commented 8 years ago

Coverage Status

Coverage decreased (-0.1%) to 78.538% when pulling b5e4e5c47eb13cd476efdadfcc0fc82854d82a13 on ryan-williams:args into 738996d8cfcc4bbcabf2138cf269b965dff5b190 on hammerlab:master.