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hammerlab / guacamole

Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly
Apache License 2.0
83 stars 21 forks source link

add PartitionReads cmd #604

Closed ryan-williams closed 7 years ago

ryan-williams commented 7 years ago

similar to #603, this command is useful for getting through most of the steps leading up to pileup-creation + variant-calling, then persisting its state and exiting, allowing for quicker iteration at the later levels.

coveralls commented 7 years ago

Coverage Status

Coverage decreased (-0.05%) to 78.932% when pulling ba394a13bef5a5c481f61e366a835810bba6a836 on ryan-williams:prc into 4afd15011eb01576ca3789ce77ea03a526515ebe on hammerlab:master.

coveralls commented 7 years ago

Coverage Status

Coverage increased (+0.009%) to 78.661% when pulling 473c5d4f6a0b3351232c8a5d1028f46419e23e1d on ryan-williams:prc into dfdfea6c9bda4040a7dd67decb862d9988b9c33c on hammerlab:master.