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Investigate RCC cohort that has bulk RNA-seq of TME and flow sorting data #44

Open maximz opened 7 years ago

maximz commented 7 years ago

https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-5640/

@jburos found this dataset and described it as "containing RNAseq for TILs isolated from ccRCC samples"

We should take a look to see if this would be a useful test. At first glance this seems to give us some ground truth for the TME.

Will the TME behave differently than PBMC samples? Will we have disease-specific profiles?

maximz commented 7 years ago

See also #5