Unicode error on every request

[danvk]

$ run_perfdash.py .... DEBUG in main [/Library/Python/2.7/site-packages/ngsdiagnostics-0.1-py2.7.egg/perfdash/main.py:99]:

Returning data for following steps: step,mergesamfiles,wallclock,printreads,realignertargetcreator,indelrealigner,markduplicates,baserecalibrator,sortsam

127.0.0.1 - - [01/Mar/2014 18:41:57] "GET /perfdash/data HTTP/1.1" 500 - Traceback (most recent call last): File "/Library/Python/2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1836, in call return self.wsgi_app(environ, start_response) File "/Library/Python/2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1820, in wsgi_app response = self.make_response(self.handle_exception(e)) File "/Library/Python/2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1403, in handle_exception reraise(exc_type, exc_value, tb) File "/Library/Python/2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1817, in wsgi_app response = self.full_dispatch_request() File "/Library/Python/2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1477, in full_dispatch_request rv = self.handle_user_exception(e) File "/Library/Python/2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1381, in handle_user_exception reraise(exc_type, exc_value, tb) File "/Library/Python/2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1475, in full_dispatch_request rv = self.dispatch_request() File "/Library/Python/2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1461, in dispatch_request return self.view_functionsrule.endpoint File "/Library/Python/2.7/site-packages/ngsdiagnostics-0.1-py2.7.egg/perfdash/main.py", line 103, in data csv_writer.writerow(x) TypeError: unicode argument expected, got 'str'

[hammer]

Blerg looks like Python 2.7's csv module doesn't like Unicode. I've been running this with Python 3.3. Let me see if there's an easy fix.

[hammer]

I just went with the poor man's TSV for now.

[danvk]

You're a Python 3 early adopter!

[hammer]

It's my New Year resolution