Visualization of predicted IC50 across genomes in a continuous manner

hammerlab / nosoi

Exploration of evolutionary signatures within viral proteomes by making use of MHC binding predictions

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Visualization of predicted IC50 across genomes in a continuous manner #4

Open armish opened 9 years ago

armish commented 9 years ago

Some inspiration from Genome Browser: f1 large

hammer commented 9 years ago

Would be an interesting visualization--you're thinking an IC50 value per 9mer (well, the base pairs that code for the 9mer)? I guess the numerical value would be centered on the middle base of the middle codon?

armish commented 9 years ago

that is exactly what I have in mind. I was thinking about smoothing the score using a rolling window of 9 aminoacids and visualizing that (like what that PhastCons track does at the top)