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hammerlab / prohlatype

Probabilistic HLA typing
Apache License 2.0
35 stars 4 forks source link

a proposal for `src/scripts/run-example-docker.sh` #149

Open biolxy opened 5 years ago

biolxy commented 5 years ago

it's better to add update apt-get in line 36 of src/scripts/run-example-docker.sh

RUN sudo apt-get

without this line, i got some error like this:

E: Failed to fetch http://security.ubuntu.com/ubuntu/pool/main/liba/libarchive/libarchive13_3.1.2-11ubuntu0.16.04.3_amd64.deb  404  Not Found [IP: 91.189.91.23 80]

   Failed to fetch http://security.ubuntu.com/ubuntu/pool/main/liba/libarchive/libarchive-dev_3.1.2-11ubuntu0.16.04.3_amd64.deb  404  Not Found [IP: 91.189.9▽.23 80]

E: Unable to fetch some archives, maybe run apt-get update or try with --fix-missing?
kloot commented 5 years ago

Great tip, made the script work better for me! I inserted RUN sudo apt-get update after line 35 to get past this step. But still died at (old) line 78 ;-(