search

hammerlab / prohlatype

Probabilistic HLA typing
Apache License 2.0
35 stars 4 forks source link

Neighbors #64

Closed rleonid closed 7 years ago

rleonid commented 7 years ago

In a similar vein as #63 , the k-mer logic currently doesn't check neighbors, which drops reads that have a mismatch. Probably best to have a queue of positions to evaluate. Place the exact matches first (on either strand), check those to set a bench mark of best. Then check 1 neighbors of those positions.

rleonid commented 7 years ago

No longer relevant in the full PHMM.