Harmonize CLUSTER_NFS_MOUNTS and biokepi_machine.ml variables

hammerlab / stratotemplate

DEPRECATED: we don't really maintain this any more, we use Coclobas:

https://github.com/hammerlab/coclobas

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Harmonize CLUSTER_NFS_MOUNTS and biokepi_machine.ml variables #27

Open hammer opened 7 years ago

hammer commented 7 years ago

Currently we NFS mount at /nfswork via test-nfs-server-vm,/test-storage,Hello.md,/nfswork in CLUSTER_NFS_MOUNTS but pass /nfs-work/biokepi/ to BIOKEPI_WORK_DIR, e.g.

hammer commented 7 years ago

Also maybe we should remove datasets-nfs-vm,/datasets-nfs-storage/,.strato-witness.txt,/nfsdatasets as @smondet says it doesn't exist in the PICI project?

smondet commented 7 years ago

It is just an example for the syntax of the variable.

hammer commented 7 years ago

Okay I think these dummy examples should be in the comment and not the variable itself as it's confusing to me

hammer commented 7 years ago

Turns out I need to replace those dummy values with the one I get from nfs_server.ml up