Document benchmark.json

hammerlab / variant-calling-benchmarks

Automated and curated variant calling benchmarks for Guacamole

Apache License 2.0

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Document benchmark.json #17

Open arahuja opened 8 years ago

arahuja commented 8 years ago

Is there some documentation on what benchmark.json should be?

By inspection, it seems that one benchmark to correspond to one file of validated variants? It can support multiple patients, but gold-standard variants should be in a single file?

timodonnell commented 8 years ago

Yeah, good question. I've added some more info to the README here (as part of PR #19), interested if this clears it up: https://github.com/hammerlab/variant-calling-benchmarks/blob/917ecb543e5d68054ce5f5b799549a28ada6d4d3/README.md