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hammerlab / variant-calling-benchmarks

Automated and curated variant calling benchmarks for Guacamole
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SKBR3 PacBio Sequencing #38

Open hammer opened 7 years ago

hammer commented 7 years ago

http://schatzlab.cshl.edu/data/skbr3/

arahuja commented 7 years ago

The BAM and fastq are available on our cluster at /datasets/skbr3

hadoop fs -ls /datasets/skbr3
Found 2 items
-rw-r--r--   3 ahujaa01 supergroup 300049300600 2015-03-31 14:20 /datasets/skbr3/SKBR3_Feb17_GRCh38.sorted.bam
-rw-r--r--   3 ahujaa01 supergroup 210050964666 2015-03-31 14:39 /datasets/skbr3/skbr3.pacbio.fastq.gz

Do we know of validated variants for this set? Is there a particular reason for including a PacBio set?