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hanchenphd / GMMAT

Generalized linear Mixed Model Association Tests
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Meta-analysis for single score test error #37

Closed ryshi06 closed 2 years ago

ryshi06 commented 3 years ago

Hi,

I was trying to perform a meta-analysis on three single score test outputs, but I receive an error of "Error in glmm.score.meta(files = c(glmm1.ann.raw.score0.int, glmm2.ann.raw.score0.int, : Error: "SNP" must have the same length as "files"!"

Basically, I am not sure what this error message means, but I checked the unique length of SNPs in each study, and the results were listed here.

length(unique(glmm2.ann.raw.score0.int$SNP)) [1] 800076 length(unique(glmm1.ann.raw.score0.int$SNP)) [1] 9195781 length(unique(glmm3.ann.raw.score0.int$SNP)) [1] 8442141

Thanks so much for helping!

Ruyu

hanchenphd commented 3 years ago

Hi Ruyu,

Thank you for your interest in GMMAT. The first argument files needs to be a character vector of the file names, and the SNP argument needs to be a character vector of the same length as files. See the help document.

Best, Han