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haniffalab / webatlas-pipeline

A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
MIT License
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Failed actions - wrong python version #110

Closed davehorsfall closed 1 year ago

davehorsfall commented 1 year ago 
Run python -m pip install --upgrade pip
Requirement already satisfied: pip in /opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages (23.0.1)
Collecting pip
  Downloading pip-23.3.1-py3-none-any.whl.metadata (3.5 kB)
Downloading pip-23.3.1-py3-none-any.whl (2.1 MB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 15.7 MB/s eta 0:00:00
Installing collected packages: pip
  Attempting uninstall: pip
    Found existing installation: pip 23.0.1
    Uninstalling pip-23.0.1:
      Successfully uninstalled pip-23.0.1
Successfully installed pip-23.3.1
Collecting aiohttp==3.8.6 (from -r ./envs/requirements.txt (line 1))
  Downloading aiohttp-3.8.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.7 kB)
Collecting aiosignal==1.3.1 (from -r ./envs/requirements.txt (line 2))
  Downloading aiosignal-1.3.1-py3-none-any.whl (7.6 kB)
Collecting anndata==0.8.0 (from -r ./envs/requirements.txt (line 3))
  Downloading anndata-0.8.0-py3-none-any.whl ([9](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:10)6 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 96.1/96.1 kB 5.8 MB/s eta 0:00:00
Collecting apeer-ometiff-library==1.9.0 (from -r ./envs/requirements.txt (line 4))
  Downloading apeer_ometiff_library-1.9.0-py3-none-any.whl (19 kB)
Collecting asciitree==0.3.3 (from -r ./envs/requirements.txt (line 5))
  Downloading asciitree-0.3.3.tar.gz (4.0 kB)
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Collecting async-timeout==4.0.3 (from -r ./envs/requirements.txt (line 6))
  Downloading async_timeout-4.0.3-py3-none-any.whl.metadata (4.2 kB)
Collecting attrs==23.1.0 (from -r ./envs/requirements.txt (line 7))
  Downloading attrs-23.1.0-py3-none-any.whl (61 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.2/61.2 kB 7.7 MB/s eta 0:00:00
Collecting Brotli==1.1.0 (from -r ./envs/requirements.txt (line 8))
  Downloading Brotli-1.1.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (5.5 kB)
Collecting cached-property==1.5.2 (from -r ./envs/requirements.txt (line 9))
  Downloading cached_property-1.5.2-py2.py3-none-any.whl (7.6 kB)
Collecting certifi==2023.7.22 (from -r ./envs/requirements.txt (line [10](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:11)))
  Downloading certifi-2023.7.22-py3-none-any.whl.metadata (2.2 kB)
Collecting cffi==1.16.0 (from -r ./envs/requirements.txt (line [11](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:12)))
  Downloading cffi-1.16.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB)
Collecting charset-normalizer==3.3.2 (from -r ./envs/requirements.txt (line [12](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:13)))
  Downloading charset_normalizer-3.3.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
Collecting click==8.1.7 (from -r ./envs/requirements.txt (line [13](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:14)))
  Downloading click-8.1.7-py3-none-any.whl.metadata (3.0 kB)
Collecting cloudpickle==3.0.0 (from -r ./envs/requirements.txt (line [14](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:15)))
  Downloading cloudpickle-3.0.0-py3-none-any.whl.metadata (7.0 kB)
Collecting colorama==0.4.6 (from -r ./envs/requirements.txt (line [15](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:16)))
  Downloading colorama-0.4.6-py2.py3-none-any.whl (25 kB)
Collecting contourpy==1.1.1 (from -r ./envs/requirements.txt (line [16](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:17)))
  Downloading contourpy-1.1.1-cp38-cp38-manylinux_2_[17](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:18)_x86_64.manylinux2014_x86_64.whl.metadata (5.9 kB)
Collecting cycler==0.12.1 (from -r ./envs/requirements.txt (line 17))
  Downloading cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
Collecting cytoolz==0.12.2 (from -r ./envs/requirements.txt (line [18](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:19)))
  Downloading cytoolz-0.12.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.5 kB)
ERROR: Ignored the following yanked versions: 2022.10.1
ERROR: Ignored the following versions that require a different python version: 0.10.0 Requires-Python >=3.9; 0.10.0rc1 Requires-Python >=3.9; 0.10.1 Requires-Python >=3.9; 0.10.2 Requires-Python >=3.9; 0.10.3 Requires-Python >=3.9; 2023.10.0 Requires-Python >=3.9; 2023.10.1 Requires-Python >=3.9; 2023.5.1 Requires-Python >=3.9; 2023.6.0 Requires-Python >=3.9; 2023.6.1 Requires-Python >=3.9; 2023.7.0 Requires-Python >=3.9; 2023.7.1 Requires-Python >=3.9; 2023.8.0 Requires-Python >=3.9; 2023.8.1 Requires-Python >=3.9; 2023.9.0 Requires-Python >=3.9; 2023.9.1 Requires-Python >=3.9; 2023.9.2 Requires-Python >=3.9; 2023.9.3 Requires-Python >=3.9
ERROR: Could not find a version that satisfies the requirement dask==2023.10.1 (from versions: 0.7.4.linux-x86_64, 0.7.5.linux-x86_64, 0.7.6.linux-x86_64, 0.8.1.macosx-10.5-x86_64, 0.2.0, 0.2.1, 0.2.2, 0.2.3, 0.2.4, 0.2.5, 0.2.6, 0.3.0, 0.4.0, 0.5.0, 0.6.0, 0.6.1, 0.7.0, 0.7.1, 0.7.2, 0.7.3, 0.7.4, 0.7.5, 0.7.6, 0.8.0, 0.8.1, 0.8.2, 0.9.0, 0.10.0, 0.10.1, 0.10.2, 0.11.0, 0.11.1, 0.12.0, 0.13.0rc1, 0.13.0, 0.14.0, 0.14.1, 0.14.2, 0.14.3, 0.15.0, 0.15.1, 0.15.2, 0.15.3, 0.15.4, 0.16.0, 0.16.1, 0.17.0, 0.17.1, 0.17.2, 0.17.3, 0.17.4, 0.17.5, 0.18.0, 0.18.1, 0.18.2, 0.[19](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:20).0, 0.19.1, 0.19.2, 0.19.3, 0.19.4, 0.[20](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:21).0, 0.20.1, 0.20.2, 1.0.0, 1.1.0, 1.1.1, 1.1.2, 1.1.3, 1.1.4, 1.1.5, 1.2.0, 1.2.1, 1.2.2, 2.0.0, 2.1.0, 2.2.0, 2.3.0, 2.4.0, 2.5.0, 2.5.2, 2.6.0, 2.7.0, 2.8.0, 2.8.1, 2.9.0, 2.9.1, 2.9.2, 2.10.0, 2.10.1, 2.11.0, 2.12.0, 2.13.0, 2.14.0, 2.15.0, 2.16.0, 2.17.0, 2.17.1, 2.17.2, 2.18.0, 2.18.1, 2.19.0, 2.20.0, 2.[21](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:22).0, 2.[22](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:23).0, 2.[23](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:24).0, 2.[24](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:25).0, 2.[25](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:26).0, 2.[26](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:27).0, 2.[27](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:28).0, 2.[28](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:29).0, 2.[29](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:30).0, 2.[30](https://github.com/haniffalab/webatlas-pipeline/actions/runs/6747428958/job/18343560347#step:4:31).0, 2020.12.0, 2021.1.0, 2021.1.1, 2021.2.0, 2021.3.0, 2021.3.1, 2021.4.0, 2021.4.1, 2021.5.0, 2021.5.1, 2021.6.0, 2021.6.1, 2021.6.2, 2021.7.0, 2021.7.1, 2021.7.2, 2021.8.0, 2021.8.1, 2021.9.0, 2021.9.1, 2021.10.0, 2021.11.0, 2021.11.1, 2021.11.2, 2021.12.0, 2022.1.0, 2022.1.1, 2022.2.0, 2022.2.1, 2022.3.0, 2022.4.0, 2022.4.1, 2022.4.2, 2022.5.0, 2022.5.1, 2022.5.2, 2022.6.0, 2022.6.1, 2022.7.0, 2022.7.1, 2022.8.0, 2022.8.1, 2022.9.0, 2022.9.1, 2022.9.2, 2022.10.0, 2022.10.2, 2022.11.0, 2022.11.1, 2022.12.0, 2022.12.1, 2023.1.0, 2023.1.1, 2023.2.0, 2023.2.1, 2023.3.0, 2023.3.1, 2023.3.2, 2023.4.0, 2023.4.1, 2023.5.0)
ERROR: No matching distribution found for dask==2023.10.1
Error: Process completed with exit code 1.