haniffalab / webatlas-pipeline

A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
MIT License
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Docs and citation #55

Closed davehorsfall closed 1 year ago

codecov-commenter commented 1 year ago

Codecov Report

Base: 39.09% // Head: 50.24% // Increases project coverage by +11.14% :tada:

Coverage data is based on head (eae0273) compared to base (96839ed). Patch coverage: 86.36% of modified lines in pull request are covered.

:exclamation: Current head eae0273 differs from pull request most recent head 789c572. Consider uploading reports for the commit 789c572 to get more accurate results

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #55 +/- ## =========================================== + Coverage 39.09% 50.24% +11.14% =========================================== Files 10 10 Lines 353 416 +63 =========================================== + Hits 138 209 +71 + Misses 215 207 -8 ``` | [Impacted Files](https://codecov.io/gh/haniffalab/vitessce-pipeline/pull/55?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab) | Coverage Δ | | |---|---|---| | [bin/\_\_init\_\_.py](https://codecov.io/gh/haniffalab/vitessce-pipeline/pull/55/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL19faW5pdF9fLnB5) | `100.00% <ø> (ø)` | | | [bin/build\_config.py](https://codecov.io/gh/haniffalab/vitessce-pipeline/pull/55/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL2J1aWxkX2NvbmZpZy5weQ==) | `0.00% <0.00%> (ø)` | | | [bin/constants.py](https://codecov.io/gh/haniffalab/vitessce-pipeline/pull/55/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL2NvbnN0YW50cy5weQ==) | `0.00% <ø> (ø)` | | | [bin/process\_spaceranger.py](https://codecov.io/gh/haniffalab/vitessce-pipeline/pull/55/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL3Byb2Nlc3Nfc3BhY2VyYW5nZXIucHk=) | `33.33% <66.66%> (+2.56%)` | :arrow_up: | | [bin/generate\_label.py](https://codecov.io/gh/haniffalab/vitessce-pipeline/pull/55/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL2dlbmVyYXRlX2xhYmVsLnB5) | `94.11% <75.00%> (+12.29%)` | :arrow_up: | | [bin/ome\_zarr\_metadata.py](https://codecov.io/gh/haniffalab/vitessce-pipeline/pull/55/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL29tZV96YXJyX21ldGFkYXRhLnB5) | `94.44% <75.00%> (-0.56%)` | :arrow_down: | | [bin/process\_h5ad.py](https://codecov.io/gh/haniffalab/vitessce-pipeline/pull/55/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL3Byb2Nlc3NfaDVhZC5weQ==) | `87.61% <98.41%> (+28.04%)` | :arrow_up: | | [bin/consolidate\_md.py](https://codecov.io/gh/haniffalab/vitessce-pipeline/pull/55/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL2NvbnNvbGlkYXRlX21kLnB5) | `92.85% <100.00%> (ø)` | | | [bin/process\_molecules.py](https://codecov.io/gh/haniffalab/vitessce-pipeline/pull/55/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL3Byb2Nlc3NfbW9sZWN1bGVzLnB5) | `77.77% <100.00%> (+0.63%)` | :arrow_up: | | [bin/router.py](https://codecov.io/gh/haniffalab/vitessce-pipeline/pull/55/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL3JvdXRlci5weQ==) | `88.88% <100.00%> (+1.38%)` | :arrow_up: | | ... and [2 more](https://codecov.io/gh/haniffalab/vitessce-pipeline/pull/55/diff?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab) | | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab)

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