haniffalab / webatlas-pipeline

A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
MIT License
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add consolidate_metadata param to process_h5ad #92

Closed dannda closed 1 year ago

codecov-commenter commented 1 year ago

Codecov Report

Patch coverage: 7.01% and project coverage change: -0.43 :warning:

Comparison is base (94a555a) 37.12% compared to head (a290152) 36.69%.

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Additional details and impacted files ```diff @@ Coverage Diff @@ ## dev #92 +/- ## ========================================== - Coverage 37.12% 36.69% -0.43% ========================================== Files 14 14 Lines 695 714 +19 ========================================== + Hits 258 262 +4 - Misses 437 452 +15 ``` | [Impacted Files](https://app.codecov.io/gh/haniffalab/webatlas-pipeline/pull/92?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab) | Coverage Δ | | |---|---|---| | [bin/build\_config.py](https://app.codecov.io/gh/haniffalab/webatlas-pipeline/pull/92?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL2J1aWxkX2NvbmZpZy5weQ==) | `0.00% <0.00%> (ø)` | | | [bin/constants.py](https://app.codecov.io/gh/haniffalab/webatlas-pipeline/pull/92?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL2NvbnN0YW50cy5weQ==) | `0.00% <0.00%> (ø)` | | | [bin/router.py](https://app.codecov.io/gh/haniffalab/webatlas-pipeline/pull/92?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL3JvdXRlci5weQ==) | `93.75% <ø> (ø)` | | | [bin/process\_xenium.py](https://app.codecov.io/gh/haniffalab/webatlas-pipeline/pull/92?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL3Byb2Nlc3NfeGVuaXVtLnB5) | `27.86% <6.66%> (-6.92%)` | :arrow_down: | | [bin/process\_spaceranger.py](https://app.codecov.io/gh/haniffalab/webatlas-pipeline/pull/92?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL3Byb2Nlc3Nfc3BhY2VyYW5nZXIucHk=) | `55.22% <16.66%> (-2.85%)` | :arrow_down: | | [bin/process\_h5ad.py](https://app.codecov.io/gh/haniffalab/webatlas-pipeline/pull/92?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL3Byb2Nlc3NfaDVhZC5weQ==) | `85.59% <100.00%> (+0.24%)` | :arrow_up: |

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