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haniffalab / webatlas-pipeline

A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
MIT License
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added conda env as an option #93

Closed BioinfoTongLI closed 1 year ago

BioinfoTongLI commented 1 year ago

it is currently recommended to locally create conda env using provided conda.yaml file (conda env create -f conda.yaml) and conda activate webatlas-0.3.2 before running the pipeline. But if the installed env is the same as '/opt/conda/envs/webatlas-0.3.2', just running the pipeline with -profile condashould suffice.

codecov-commenter commented 1 year ago

Codecov Report

Patch and project coverage have no change.

Comparison is base (c34922d) 36.28% compared to head (a4c1a68) 36.28%.

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Additional details and impacted files ```diff @@ Coverage Diff @@ ## dev #93 +/- ## ======================================= Coverage 36.28% 36.28% ======================================= Files 14 14 Lines 722 722 ======================================= Hits 262 262 Misses 460 460 ```

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