haniffalab / webatlas-pipeline

A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
MIT License
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Resolve Multimodal support for pipeline #97

Closed davehorsfall closed 1 year ago

codecov-commenter commented 1 year ago

Codecov Report

Attention: 176 lines in your changes are missing coverage. Please review.

Comparison is base (c34922d) 36.28% compared to head (ca5fc75) 30.91%. Report is 27 commits behind head on dev.

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Additional details and impacted files ```diff @@ Coverage Diff @@ ## dev #97 +/- ## ========================================== - Coverage 36.28% 30.91% -5.38% ========================================== Files 14 15 +1 Lines 722 867 +145 ========================================== + Hits 262 268 +6 - Misses 460 599 +139 ``` | [Files](https://app.codecov.io/gh/haniffalab/webatlas-pipeline/pull/97?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab) | Coverage Δ | | |---|---|---| | [bin/constants/suffixes.py](https://app.codecov.io/gh/haniffalab/webatlas-pipeline/pull/97?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL2NvbnN0YW50cy9zdWZmaXhlcy5weQ==) | `100.00% <100.00%> (ø)` | | | [bin/process\_merscope.py](https://app.codecov.io/gh/haniffalab/webatlas-pipeline/pull/97?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL3Byb2Nlc3NfbWVyc2NvcGUucHk=) | `23.68% <ø> (ø)` | | | [bin/process\_molecules.py](https://app.codecov.io/gh/haniffalab/webatlas-pipeline/pull/97?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL3Byb2Nlc3NfbW9sZWN1bGVzLnB5) | `78.94% <100.00%> (+1.16%)` | :arrow_up: | | [bin/build\_config.py](https://app.codecov.io/gh/haniffalab/webatlas-pipeline/pull/97?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL2J1aWxkX2NvbmZpZy5weQ==) | `0.00% <0.00%> (ø)` | | | [bin/process\_h5ad.py](https://app.codecov.io/gh/haniffalab/webatlas-pipeline/pull/97?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL3Byb2Nlc3NfaDVhZC5weQ==) | `85.71% <50.00%> (+0.12%)` | :arrow_up: | | [bin/process\_spaceranger.py](https://app.codecov.io/gh/haniffalab/webatlas-pipeline/pull/97?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL3Byb2Nlc3Nfc3BhY2VyYW5nZXIucHk=) | `54.28% <60.00%> (-0.94%)` | :arrow_down: | | [bin/process\_xenium.py](https://app.codecov.io/gh/haniffalab/webatlas-pipeline/pull/97?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL3Byb2Nlc3NfeGVuaXVtLnB5) | `24.63% <0.00%> (ø)` | | | [bin/integrate\_anndata.py](https://app.codecov.io/gh/haniffalab/webatlas-pipeline/pull/97?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL2ludGVncmF0ZV9hbm5kYXRhLnB5) | `0.00% <0.00%> (ø)` | | | [bin/integrate\_image.py](https://app.codecov.io/gh/haniffalab/webatlas-pipeline/pull/97?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL2ludGVncmF0ZV9pbWFnZS5weQ==) | `0.00% <0.00%> (ø)` | | | [bin/build\_config\_multimodal.py](https://app.codecov.io/gh/haniffalab/webatlas-pipeline/pull/97?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab#diff-YmluL2J1aWxkX2NvbmZpZ19tdWx0aW1vZGFsLnB5) | `0.00% <0.00%> (ø)` | | ... and [1 file with indirect coverage changes](https://app.codecov.io/gh/haniffalab/webatlas-pipeline/pull/97/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=haniffalab)

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