Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)
K-mer size could be a slot in the spectrum class. Default value could be NA. This would then make it possible to compute pi and per-nucleotide divergence in allopolyploids.
K-mer size could be a slot in the spectrum class. Default value could be
NA. This would then make it possible to compute pi and per-nucleotide divergence in allopolyploids.