zyworship
commented
6 years ago Open zyworship opened 6 years ago
zyworship
commented
6 years ago 
PeteHaitch
commented
6 years ago I've seen this error when it runs out of memory. Can you successfully run fewer than 7 samples?
zyworship
commented
6 years ago @PeteHaitch I separated into scaffolds to run the bsseq, than it works. But I have another question. I apply for a 800G ram to run the total data, it has been read.bismark, but there is also reporting an error. This is my log file:
Loading required package: methods
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
anyDuplicated, append, as.data.frame, cbind, colMeans, colnames,
colSums, do.call, duplicated, eval, evalq, Filter, Find, get, grep,
grepl, intersect, is.unsorted, lapply, lengths, Map, mapply, match,
mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank,
rbind, Reduce, rowMeans, rownames, rowSums, sapply, setdiff, sort,
table, tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: S4Vectors
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:base’:
expand.grid
Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: SummarizedExperiment
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: DelayedArray
Loading required package: matrixStats
Attaching package: ‘matrixStats’
The following objects are masked from ‘package:Biobase’:
anyMissing, rowMedians
Attaching package: ‘DelayedArray’
The following objects are masked from ‘package:matrixStats’:
colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges
The following object is masked from ‘package:base’:
apply
Assuming file type is cytosineReport
Error in .Call2("valid_Ranges", x_start, x_end, x_width, PACKAGE = "IRanges") :
long vectors not supported yet: ../../../src/main/memory.c:3451
Calls: read.bismark ... anyStrings -> validityMethod -> valid.func -> .Call2 -> .Call
Execution haltedHave you met this error before ?
PeteHaitch
commented
6 years ago I have not seen this error. I have a suspicion what is causing it, but in order to investigate properly I really need a reproducible example.
Are you able to share one or more of your report.files to help me debug this error?
Please also post the output of sessionInfo() and BiocInstaller::biocValid() so I can see which package versions you are using.
zyworship
commented
6 years ago @PeteHaitch Thanks a lot, I try to give you a file ,but the report.files is to big, one file is more than 20gb. I am a little worry how to share the file with you. I have try run bsseq with scaffold, it run regularly and generate the dmr_file.
> sessionInfo()
R version 3.4.3 (2017-11-30)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS: /GS01/software/biosoft/Rsoft/R3.4.3/lib64/R/lib/libRblas.so
LAPACK: /GS01/software/biosoft/Rsoft/R3.4.3/lib64/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats4 parallel stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] bsseq_1.14.0 SummarizedExperiment_1.8.1
[3] DelayedArray_0.4.1 matrixStats_0.53.1
[5] Biobase_2.38.0 GenomicRanges_1.30.3
[7] GenomeInfoDb_1.14.0 IRanges_2.12.0
[9] S4Vectors_0.16.0 BiocGenerics_0.24.0
loaded via a namespace (and not attached):
[1] Rcpp_0.12.16 XVector_0.18.0 zlibbioc_1.24.0
[4] munsell_0.4.3 colorspace_1.3-2 lattice_0.20-35
[7] plyr_1.8.4 tools_3.4.3 grid_3.4.3
[10] data.table_1.10.4-3 R.oo_1.21.0 gtools_3.5.0
[13] permute_0.9-4 Matrix_1.2-12 GenomeInfoDbData_1.0.0
[16] R.utils_2.6.0 bitops_1.0-6 RCurl_1.95-4.10
[19] limma_3.34.9 compiler_3.4.3 R.methodsS3_1.7.1
[22] scales_0.5.0 locfit_1.5-9.1
> BiocInstaller::biocValid()
* sessionInfo()
R version 3.4.3 (2017-11-30)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS: /GS01/software/biosoft/Rsoft/R3.4.3/lib64/R/lib/libRblas.so
LAPACK: /GS01/software/biosoft/Rsoft/R3.4.3/lib64/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats4 parallel stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] bsseq_1.14.0 SummarizedExperiment_1.8.1
[3] DelayedArray_0.4.1 matrixStats_0.53.1
[5] Biobase_2.38.0 GenomicRanges_1.30.3
[7] GenomeInfoDb_1.14.0 IRanges_2.12.0
[9] S4Vectors_0.16.0 BiocGenerics_0.24.0
loaded via a namespace (and not attached):
[1] Rcpp_0.12.16 XVector_0.18.0 zlibbioc_1.24.0
[4] munsell_0.4.3 colorspace_1.3-2 lattice_0.20-35
[7] plyr_1.8.4 tools_3.4.3 grid_3.4.3
[10] data.table_1.10.4-3 R.oo_1.21.0 gtools_3.5.0
[13] permute_0.9-4 Matrix_1.2-12 GenomeInfoDbData_1.0.0
[16] R.utils_2.6.0 bitops_1.0-6 RCurl_1.95-4.10
[19] limma_3.34.9 BiocInstaller_1.28.0 compiler_3.4.3
[22] R.methodsS3_1.7.1 scales_0.5.0 locfit_1.5-9.1
* Out-of-date packages
Package
bindrcpp "bindrcpp"
blob "blob"
curl "curl"
GenomicAlignments "GenomicAlignments"
monocle "monocle"
plogr "plogr"
proxy "proxy"
RSQLite "RSQLite"
viridis "viridis"
LibPath
bindrcpp "/GS01/software/biosoft/Rsoft/R3.4.3/lib64/R/library"
blob "/GS01/software/biosoft/Rsoft/R3.4.3/lib64/R/library"
curl "/GS01/software/biosoft/Rsoft/R3.4.3/lib64/R/library"
GenomicAlignments "/GS01/software/biosoft/Rsoft/R3.4.3/lib64/R/library"
monocle "/GS01/software/biosoft/Rsoft/R3.4.3/lib64/R/library"
plogr "/GS01/software/biosoft/Rsoft/R3.4.3/lib64/R/library"
proxy "/GS01/software/biosoft/Rsoft/R3.4.3/lib64/R/library"
RSQLite "/GS01/software/biosoft/Rsoft/R3.4.3/lib64/R/library"
viridis "/GS01/software/biosoft/Rsoft/R3.4.3/lib64/R/library"
Installed Built ReposVer
bindrcpp "0.2" "3.4.3" "0.2.2"
blob "1.1.0" "3.4.3" "1.1.1"
curl "3.1" "3.4.3" "3.2"
GenomicAlignments "1.14.1" "3.4.3" "1.14.2"
monocle "2.6.3" "3.4.3" "2.6.4"
plogr "0.1-1" "3.4.3" "0.2.0"
proxy "0.4-21" "3.4.3" "0.4-22"
RSQLite "2.0" "3.4.3" "2.1.0"
viridis "0.5.0" "3.4.3" "0.5.1"
Repository
bindrcpp "https://cran.rstudio.com/src/contrib"
blob "https://cran.rstudio.com/src/contrib"
curl "https://cran.rstudio.com/src/contrib"
GenomicAlignments "https://bioconductor.org/packages/3.6/bioc/src/contrib"
monocle "https://bioconductor.org/packages/3.6/bioc/src/contrib"
plogr "https://cran.rstudio.com/src/contrib"
proxy "https://cran.rstudio.com/src/contrib"
RSQLite "https://cran.rstudio.com/src/contrib"
viridis "https://cran.rstudio.com/src/contrib"
update with biocLite()
* Packages too new for Bioconductor version '3.6'
Version LibPath
methylKit "1.5.2" "/GS01/software/biosoft/Rsoft/R3.4.3/lib64/R/library"
downgrade with biocLite("methylKit")
Error: 9 package(s) out of date; 1 package(s) too new
>@PeteHaitch I cut the header 2k line of one of my report.files like this:
scaffold1 3 - 0 0 CHH CTA
scaffold1 5 - 0 0 CHH CTC
scaffold1 7 - 0 0 CHH CTC
scaffold1 11 + 0 2 CHH CAA
scaffold1 15 - 0 1 CHH CTT
scaffold1 19 + 0 3 CHH CAT
scaffold1 23 - 0 1 CHH CAA
scaffold1 26 - 0 1 CHH CAA
scaffold1 32 + 0 3 CHH CAT
scaffold1 36 - 0 1 CHH CAA
scaffold1 39 + 0 3 CHG CAG
scaffold1 41 - 0 1 CHG CTG
scaffold1 42 - 0 1 CHH CCT
scaffold1 43 - 0 2 CHH CCC
scaffold1 44 - 0 2 CHH CCC
scaffold1 52 - 0 3 CHH CTT
scaffold1 53 + 0 3 CHH CAC
scaffold1 55 + 0 3 CHG CAG
scaffold1 57 - 0 5 CHG CTG
scaffold1 59 + 0 3 CHH CCT
scaffold1 60 + 0 3 CHH CTC
scaffold1 62 + 0 3 CHH CCT
scaffold1 63 + 0 3 CHG CTG
scaffold1 65 - 0 6 CHG CAG
scaffold1 66 + 0 3 CHH CCT
scaffold1 67 + 0 3 CHG CTG
scaffold1 69 - 0 6 CHG CAG
scaffold1 70 - 0 6 CHH CCA
scaffold1 71 - 0 6 CHH CCC
scaffold1 74 + 0 3 CHH CTC
scaffold1 76 + 0 3 CHH CAC
scaffold1 78 + 0 3 CHG CTG
scaffold1 80 - 0 6 CHG CAG
scaffold1 82 + 0 4 CHH CAA
scaffold1 86 - 0 6 CHH CAT
scaffold1 89 + 2 2 CG CGG
scaffold1 90 - 4 2 CG CGT
scaffold1 91 - 0 5 CHG CCG
scaffold1 93 - 0 6 CHH CTC
scaffold1 95 + 0 4 CHH CCT
scaffold1 96 + 0 4 CHH CTC
scaffold1 98 + 0 4 CHH CCA
scaffold1 99 + 0 4 CHH CAA
scaffold1 102 + 0 4 CHH CCC
scaffold1 103 + 0 4 CHH CCT
scaffold1 104 + 0 4 CHG CTG
scaffold1 106 - 0 6 CHG CAG
scaffold1 109 - 0 6 CHH CTT
scaffold1 110 + 0 4 CHH CTT
scaffold1 113 + 0 4 CHH CAT
scaffold1 116 - 0 6 CHH CAT
scaffold1 118 - 0 6 CHH CAC
scaffold1 120 + 0 4 CHH CAC
scaffold1 122 + 0 4 CHH CCC
scaffold1 123 + 0 4 CHH CCC
scaffold1 124 + 0 4 CHH CCT
scaffold1 125 + 0 4 CHH CTC
scaffold1 127 + 0 4 CHH CTT
scaffold1 130 + 0 4 CHH CCT
scaffold1 131 + 0 4 CHG CTG
scaffold1 133 - 0 7 CHG CAG
scaffold1 134 + 0 4 CHH CTT
scaffold1 137 + 0 4 CHH CCC
scaffold1 138 + 0 4 CHH CCT
scaffold1 139 + 0 4 CHH CTA
scaffold1 143 - 1 6 CHH CAT
scaffold1 146 - 0 7 CHH CTA
scaffold1 147 + 0 4 CHH CCC
scaffold1 148 + 0 4 CHH CCC
scaffold1 149 + 0 4 CHH CCA
scaffold1 150 + 0 4 CHG CAG
scaffold1 152 - 0 7 CHG CTG
scaffold1 154 - 0 7 CHH CAC
scaffold1 155 + 0 4 CHH CAA
scaffold1 159 - 0 8 CHH CAT
scaffold1 160 + 0 4 CHH CAA
scaffold1 164 - 0 8 CHH CAT
scaffold1 165 - 0 8 CHH CCA
scaffold1 167 - 0 8 CHH CTC
scaffold1 168 - 0 8 CHH CCT
scaffold1 169 + 0 4 CHG CTG
scaffold1 171 - 0 8 CHG CAG
scaffold1 175 - 0 8 CHH CAA
scaffold1 176 - 0 8 CHH CCA
scaffold1 178 + 0 4 CHH CCA
scaffold1 179 + 0 4 CHH CAT
scaffold1 182 - 0 8 CHH CAT
scaffold1 184 + 0 3 CHH CCC
scaffold1 185 + 0 3 CHH CCC
scaffold1 186 + 0 3 CHH CCC
scaffold1 187 + 0 3 CHH CCC
scaffold1 188 + 0 3 CHH CCT
scaffold1 189 + 0 3 CHH CTT
scaffold1 193 + 0 3 CHH CCC
scaffold1 194 + 1 2 CHH CCT
scaffold1 195 + 0 3 CHG CTG
scaffold1 197 - 0 8 CHG CAG
scaffold1 198 - 0 8 CHH CCA
scaffold1 200 - 0 8 CHH CTC
scaffold1 203 - 0 10 CHH CAT
scaffold1 204 + 0 3 CHH CTC
scaffold1 206 + 0 3 CHH CCA
scaffold1 207 + 0 3 CHH CAA
scaffold1 211 - 0 9 CHH CAT
scaffold1 212 - 0 9 CHH CCA
scaffold1 214 - 0 9 CHH CTC
scaffold1 215 - 0 9 CHH CCT
scaffold1 216 - 0 11 CHH CCC
scaffold1 225 - 1 11 CHH CAA
scaffold1 233 - 0 12 CHH CAA
scaffold1 237 + 0 4 CHH CAT
scaffold1 241 + 0 5 CHG CCG
scaffold1 242 + 3 2 CG CGC
scaffold1 243 - 6 6 CG CGG
scaffold1 244 + 0 5 CHH CCC
scaffold1 245 + 0 5 CHH CCT
scaffold1 246 + 0 5 CHH CTA
scaffold1 250 + 0 5 CHG CTG
scaffold1 252 - 0 11 CHG CAG
scaffold1 253 + 0 5 CHG CAG
scaffold1 255 - 0 11 CHG CTG
scaffold1 261 - 0 9 CHH CAA
scaffold1 262 + 0 6 CHH CTT
scaffold1 267 + 0 6 CHH CAC
scaffold1 269 + 0 6 CHH CAC
scaffold1 271 + 0 6 CHH CAT
scaffold1 276 - 0 9 CHH CAA
scaffold1 277 + 0 6 CHG CAG
scaffold1 279 - 1 9 CHG CTG
scaffold1 281 + 0 6 CHG CTG
scaffold1 283 - 1 8 CHG CAG
scaffold1 285 - 1 7 CHH CTC
scaffold1 288 - 1 7 CHH CTT
scaffold1 290 - 0 8 CHH CTC
scaffold1 294 - 1 7 CHH CAA
scaffold1 297 + 0 8 CHH CTC
scaffold1 299 + 0 8 CHG CTG
scaffold1 301 - 1 7 CHG CAG
scaffold1 303 + 0 8 CHH CAC
scaffold1 305 + 0 8 CHH CCT
scaffold1 306 + 0 8 CHG CTG
scaffold1 308 - 1 6 CHG CAG
scaffold1 309 + 0 8 CHG CCG
scaffold1 310 + 1 7 CG CGG
scaffold1 311 - 2 5 CG CGG
scaffold1 312 - 1 6 CHG CCG
scaffold1 315 - 1 7 CHH CTT
scaffold1 317 - 1 7 CHH CAC
scaffold1 318 - 1 8 CHH CCA
scaffold1 320 - 1 8 CHH CAC
scaffold1 323 - 1 8 CHH CTT
scaffold1 325 - 1 8 CHH CTC
scaffold1 328 + 0 10 CHH CTT
scaffold1 333 + 0 9 CHG CTG
scaffold1 335 - 1 6 CHG CAG
scaffold1 338 - 1 7 CHH CAT
scaffold1 339 + 0 12 CHG CAG
scaffold1 341 - 1 6 CHG CTG
scaffold1 346 - 1 5 CHH CAA
scaffold1 347 - 1 5 CHH CCA
scaffold1 350 + 0 12 CHH CCC
scaffold1 351 + 0 12 CHH CCC
scaffold1 352 + 0 12 CHH CCT
scaffold1 353 + 0 12 CHG CTG
scaffold1 355 - 1 5 CHG CAG
scaffold1 356 - 1 5 CHH CCA
scaffold1 359 - 0 6 CHH CTA
scaffold1 361 - 0 6 CHH CTC
scaffold1 362 - 0 7 CHH CCT
scaffold1 365 + 0 12 CHG CTG
scaffold1 367 - 0 7 CHG CAG
scaffold1 369 + 0 12 CHH CAT
scaffold1 372 + 0 12 CHH CAA
scaffold1 376 + 0 12 CHG CTG
scaffold1 378 - 1 6 CHG CAG
scaffold1 380 + 0 12 CHG CAG
scaffold1 382 - 1 6 CHG CTG
scaffold1 383 + 1 11 CG CGT
scaffold1 384 - 1 6 CG CGC
scaffold1 389 + 0 13 CHH CAC
scaffold1 391 + 0 13 CHH CAA
scaffold1 395 - 1 7 CHH CAT
scaffold1 396 + 1 12 CG CGA
scaffold1 397 - 2 6 CG CGC
scaffold1 399 - 1 6 CHH CTC
scaffold1 400 - 1 7 CHH CCT
scaffold1 402 - 1 7 CHH CAC
scaffold1 403 - 1 7 CHH CCA
scaffold1 404 - 0 8 CHH CCC
scaffold1 405 - 0 9 CHH CCC
scaffold1 406 - 0 9 CHH CCC
scaffold1 407 - 0 9 CHH CCC
scaffold1 409 - 0 9 CHH CAC
scaffold1 410 - 1 8 CHH CCA
scaffold1 411 - 0 9 CHH CCC
scaffold1 412 - 0 9 CHH CCC
scaffold1 413 - 0 10 CHH CCC
scaffold1 414 - 0 10 CHH CCC
scaffold1 416 - 0 10 CHH CTC
scaffold1 419 + 0 12 CHG CTG
scaffold1 421 - 1 9 CHG CAG
scaffold1 422 - 1 9 CHH CCA
scaffold1 423 + 1 12 CHG CTG
scaffold1 425 - 1 9 CHG CAG
scaffold1 426 + 0 11 CHH CAC
scaffold1 428 + 0 11 CHH CAT
scaffold1 433 + 0 12 CHH CAT
scaffold1 437 + 0 12 CHH CAC
scaffold1 439 + 0 12 CHH CCT
scaffold1 440 + 0 12 CHH CTC
scaffold1 442 + 0 12 CHH CTA
scaffold1 447 + 0 12 CHH CTC
scaffold1 449 + 0 12 CHH CTT
scaffold1 452 + 0 12 CHH CAT
scaffold1 456 - 1 11 CHH CAA
scaffold1 463 + 0 12 CHH CAT
scaffold1 470 + 0 12 CHG CCG
scaffold1 471 + 6 6 CG CGC
scaffold1 472 - 6 6 CG CGG
scaffold1 473 + 0 12 CHG CAG
scaffold1 475 - 1 11 CHG CTG
scaffold1 478 + 4 8 CG CGA
scaffold1 479 - 5 8 CG CGT
scaffold1 481 - 0 13 CHH CTC
scaffold1 482 - 1 12 CHH CCT
scaffold1 483 - 1 13 CHH CCC
scaffold1 484 - 0 14 CHH CCC
scaffold1 488 - 1 14 CHH CTT
scaffold1 490 + 0 11 CHH CTC
scaffold1 492 + 0 10 CHG CCG
scaffold1 493 + 4 6 CG CGG
scaffold1 494 - 9 7 CG CGG
scaffold1 495 - 1 15 CHG CCG
scaffold1 496 - 1 15 CHH CCC
scaffold1 501 + 0 9 CHH CCT
scaffold1 502 + 0 9 CHH CTC
scaffold1 504 + 0 9 CHG CTG
scaffold1 506 - 0 15 CHG CAG
scaffold1 508 - 0 15 CHH CTC
scaffold1 509 + 0 9 CHH CTT
scaffold1 512 + 0 9 CHH CAT
scaffold1 516 + 0 9 CHH CAA
scaffold1 519 + 0 8 CHH CCA
scaffold1 520 + 0 8 CHH CAA
scaffold1 528 - 0 13 CHH CTT
scaffold1 531 + 0 8 CHH CAA
scaffold1 538 - 0 15 CHH CTT
scaffold1 541 - 0 17 CHH CAT
scaffold1 543 + 1 8 CHH CAT
scaffold1 552 - 0 17 CHH CAT
scaffold1 553 - 0 17 CHH CCA
scaffold1 557 + 0 8 CHH CAC
scaffold1 559 + 1 5 CG CGG
scaffold1 560 - 5 13 CG CGT
scaffold1 561 - 0 18 CHG CCG
scaffold1 564 + 0 6 CHH CAC
scaffold1 566 + 0 6 CHH CAT
scaffold1 569 - 0 19 CHH CAT
scaffold1 571 - 1 18 CHH CTC
scaffold1 574 + 0 6 CHG CTG
scaffold1 576 - 1 16 CHG CAG
scaffold1 578 + 0 6 CHH CCC
scaffold1 579 + 0 6 CHH CCA
scaffold1 580 + 0 6 CHH CAA
scaffold1 583 + 0 6 CG CGT
scaffold1 584 - 7 12 CG CGT
scaffold1 586 - 1 18 CHH CAC
scaffold1 587 - 0 19 CHH CCA
scaffold1 588 + 0 4 CHH CTT
scaffold1 591 - 0 19 CHH CAA
scaffold1 595 - 0 19 CHH CAT
scaffold1 596 - 0 19 CHH CCA
scaffold1 598 - 0 19 CHH CAC
scaffold1 600 + 0 4 CHH CAT
scaffold1 605 + 0 4 CHH CTA
scaffold1 611 + 0 4 CHH CCT
scaffold1 612 + 0 4 CHH CTT
scaffold1 618 + 0 4 CHH CTA
scaffold1 621 + 0 5 CHH CTC
scaffold1 623 + 0 4 CHH CAC
scaffold1 625 + 0 5 CHH CAA
scaffold1 629 + 0 5 CHH CCA
scaffold1 630 + 0 5 CHH CAA
scaffold1 634 + 0 6 CHH CTA
scaffold1 637 - 0 20 CHH CTA
scaffold1 643 + 0 7 CHH CAA
scaffold1 647 + 0 7 CHH CAC
scaffold1 649 + 3 4 CG CGA
scaffold1 650 - 10 9 CG CGT
scaffold1 654 + 0 7 CHH CAC
scaffold1 656 + 0 6 CHG CAG
scaffold1 658 - 0 19 CHG CTG
scaffold1 659 + 0 6 CHH CTA
scaffold1 663 + 0 5 CHH CAC
scaffold1 665 + 0 5 CHH CAC
scaffold1 667 + 0 5 CHG CCG
scaffold1 668 + 2 3 CG CGA
scaffold1 669 - 9 10 CG CGG
scaffold1 671 - 0 19 CHH CTC
scaffold1 672 - 0 19 CHH CCT
scaffold1 674 - 0 19 CHH CAC
scaffold1 678 + 3 2 CG CGG
scaffold1 679 - 8 9 CG CGT
scaffold1 680 - 0 17 CHG CCG
scaffold1 683 + 0 5 CHH CCT
scaffold1 684 + 0 5 CHH CTC
scaffold1 686 + 0 5 CHG CAG
scaffold1 688 - 0 15 CHG CTG
scaffold1 690 + 0 6 CHH CAT
scaffold1 693 + 0 6 CHH CAT
scaffold1 696 + 0 6 CHG CAG
scaffold1 698 - 0 16 CHG CTG
scaffold1 700 + 0 6 CHH CCA
scaffold1 701 + 1 5 CHH CAA
scaffold1 705 - 0 16 CHH CTT
scaffold1 707 + 0 7 CHH CAT
scaffold1 710 + 3 4 CG CGG
scaffold1 711 - 9 5 CG CGA
scaffold1 712 - 0 14 CHG CCG
scaffold1 715 - 0 14 CHH CTT
scaffold1 718 + 0 6 CHH CTC
scaffold1 720 + 0 6 CHH CAA
scaffold1 724 + 0 6 CHH CAC
scaffold1 726 + 0 7 CHH CAA
scaffold1 729 - 0 14 CHH CTT
scaffold1 730 - 0 14 CHH CCT
scaffold1 731 + 0 9 CHH CTA
scaffold1 734 - 0 14 CHH CTA
scaffold1 742 - 0 12 CHH CTT
scaffold1 745 + 0 10 CHH CCC
scaffold1 746 + 0 10 CHH CCT
scaffold1 747 + 0 10 CHH CTA
scaffold1 752 + 0 10 CHH CTT
scaffold1 755 - 0 9 CHH CAA
scaffold1 756 - 0 9 CHH CCA
scaffold1 757 + 0 10 CHH CTA
scaffold1 762 - 0 5 CHH CTT
scaffold1 764 + 0 10 CHH CTT
scaffold1 767 - 0 5 CHH CAA
scaffold1 769 - 0 5 CHH CAC
scaffold1 774 - 0 5 CHH CAA
scaffold1 776 - 0 5 CHH CTC
scaffold1 779 + 0 10 CHG CAG
scaffold1 781 - 0 4 CHG CTG
scaffold1 785 - 0 4 CHH CAT
scaffold1 787 - 0 4 CHH CTC
scaffold1 788 - 0 4 CHH CCT
scaffold1 791 + 0 10 CHH CCC
scaffold1 792 + 0 10 CHH CCT
scaffold1 793 + 0 9 CHG CTG
scaffold1 795 - 0 5 CHG CAG
scaffold1 797 - 0 5 CHH CTC
scaffold1 798 - 0 5 CHH CCT
scaffold1 799 - 0 5 CHH CCC
scaffold1 800 - 0 5 CHH CCC
scaffold1 805 + 0 9 CHH CAT
scaffold1 808 - 0 5 CHH CAT
scaffold1 811 - 0 5 CHH CAT
scaffold1 812 - 0 5 CHH CCA
scaffold1 814 - 0 6 CHH CTC
scaffold1 815 - 0 7 CHH CCT
scaffold1 820 + 0 9 CHH CTT
scaffold1 827 + 0 10 CHH CCC
scaffold1 828 + 1 9 CHG CCG
scaffold1 829 + 9 1 CG CGT
scaffold1 830 - 5 1 CG CGG
scaffold1 832 - 0 6 CHH CAC
scaffold1 833 - 0 5 CHH CCA
scaffold1 836 + 0 10 CHH CTC
scaffold1 838 + 0 10 CHH CAA
scaffold1 841 + 0 10 CHG CTG
scaffold1 843 - 0 6 CHG CAG
scaffold1 844 - 0 6 CHH CCA
scaffold1 846 - 0 6 CHH CAC
scaffold1 847 - 0 6 CHH CCA
scaffold1 848 - 0 6 CHH CCC
scaffold1 850 + 0 10 CHH CAT
scaffold1 853 - 0 6 CHH CAT
scaffold1 855 + 0 8 CHH CCC
scaffold1 856 + 0 8 CHH CCA
scaffold1 857 + 0 8 CHG CAG
scaffold1 859 - 0 7 CHG CTG
scaffold1 862 - 0 7 CHH CTT
scaffold1 864 - 0 7 CHH CAC
scaffold1 865 - 0 7 CHH CCA
scaffold1 866 - 0 8 CHH CCC
scaffold1 868 + 6 2 CG CGC
scaffold1 869 - 7 1 CG CGA
scaffold1 870 + 7 0 CG CGG
scaffold1 871 - 8 0 CG CGC
scaffold1 872 - 0 8 CHG CCG
scaffold1 874 + 0 7 CHH CCC
scaffold1 875 + 0 7 CHH CCA
scaffold1 876 + 0 7 CHH CAT
scaffold1 879 - 0 7 CHH CAT
scaffold1 882 + 0 9 CHG CTG
scaffold1 884 - 0 7 CHG CAG
scaffold1 886 - 0 7 CHH CAC
scaffold1 887 - 0 7 CHH CCA
scaffold1 888 - 1 6 CHH CCC
scaffold1 890 + 0 9 CHH CAC
scaffold1 892 + 0 9 CHG CCG
scaffold1 893 + 8 1 CG CGC
scaffold1 894 - 6 1 CG CGG
scaffold1 895 + 0 9 CHH CAT
scaffold1 898 - 0 7 CHH CAT
scaffold1 899 + 0 9 CHH CCT
scaffold1 900 + 0 9 CHH CTT
scaffold1 903 + 0 9 CHH CCA
scaffold1 904 + 0 9 CHH CAC
scaffold1 906 + 0 9 CHG CTG
scaffold1 908 - 1 5 CHG CAG
scaffold1 909 + 0 9 CHH CAC
scaffold1 911 + 0 9 CHH CTA
scaffold1 914 - 0 6 CHH CTA
scaffold1 917 - 0 5 CHH CAT
scaffold1 919 - 0 5 CHH CTC
scaffold1 921 - 0 5 CHH CTC
scaffold1 922 - 0 5 CHH CCT
scaffold1 925 + 0 9 CHH CCT
scaffold1 926 + 0 9 CHH CTC
scaffold1 928 + 0 9 CHG CAG
scaffold1 930 - 0 7 CHG CTG
scaffold1 931 + 0 9 CHH CCC
scaffold1 932 + 0 9 CHH CCC
scaffold1 933 + 0 8 CHH CCC
scaffold1 934 + 0 8 CHH CCC
scaffold1 935 + 0 8 CHH CCT
scaffold1 936 + 0 8 CHH CTC
scaffold1 938 + 0 8 CHH CCA
scaffold1 939 + 0 8 CHH CAT
scaffold1 945 - 0 5 CHH CAT
scaffold1 946 + 0 8 CHH CAT
scaffold1 949 + 6 1 CG CGC
scaffold1 950 - 5 1 CG CGA
scaffold1 951 + 0 7 CHG CTG
scaffold1 953 - 0 6 CHG CAG
scaffold1 955 - 0 6 CHH CAC
scaffold1 959 - 0 6 CHH CTA
scaffold1 960 - 0 6 CHH CCT
scaffold1 961 + 0 6 CHG CCG
scaffold1 962 + 6 0 CG CGC
scaffold1 963 - 6 0 CG CGG
scaffold1 964 + 0 7 CHH CCT
scaffold1 965 + 1 6 CHG CTG
scaffold1 967 - 0 6 CHG CAG
scaffold1 968 - 0 6 CHH CCA
scaffold1 969 + 5 1 CG CGC
scaffold1 970 - 6 0 CG CGC
scaffold1 971 + 0 6 CHG CTG
scaffold1 973 - 0 6 CHG CAG
scaffold1 977 - 0 6 CHH CAA
scaffold1 979 + 0 8 CHG CAG
scaffold1 981 - 0 6 CHG CTG
scaffold1 982 + 0 8 CHH CTT
scaffold1 986 - 0 7 CHH CTA
scaffold1 987 - 0 7 CHH CCT
scaffold1 988 - 0 7 CHH CCC
scaffold1 990 - 0 7 CHH CAC
scaffold1 991 - 0 7 CHH CCA
scaffold1 992 - 0 7 CHH CCC
scaffold1 993 + 0 8 CHG CTG
scaffold1 995 - 0 6 CHG CAG
scaffold1 996 - 0 7 CHH CCA
scaffold1 997 - 0 7 CHH CCC
scaffold1 998 - 0 7 CHH CCC
scaffold1 1003 - 0 7 CHH CAT
scaffold1 1004 - 0 7 CHH CCA
scaffold1 1005 + 0 7 CHG CCG
scaffold1 1006 + 5 1 CG CGG
scaffold1 1007 - 6 1 CG CGG
scaffold1 1008 - 0 7 CHG CCG
scaffold1 1009 - 0 7 CHH CCC
scaffold1 1011 - 0 7 CHH CTC
scaffold1 1012 - 0 7 CHH CCT
scaffold1 1013 - 0 7 CHH CCC
scaffold1 1015 - 0 7 CHH CTC
scaffold1 1016 + 0 6 CHH CTC
scaffold1 1018 + 0 6 CHH CCA
scaffold1 1019 + 0 6 CHH CAT
scaffold1 1023 + 0 6 CHH CAT
scaffold1 1027 + 0 6 CHH CCT
scaffold1 1028 + 0 6 CHG CTG
scaffold1 1030 - 0 7 CHG CAG
scaffold1 1031 + 0 6 CHH CAT
scaffold1 1035 - 0 7 CHH CAA
scaffold1 1036 + 0 6 CHH CTT
scaffold1 1042 - 0 7 CHH CTA
scaffold1 1043 + 0 6 CHH CTC
scaffold1 1045 + 0 6 CHH CCC
scaffold1 1046 + 0 6 CHH CCT
scaffold1 1047 + 0 6 CHH CTC
scaffold1 1049 + 4 2 CG CGC
scaffold1 1050 - 7 0 CG CGA
scaffold1 1051 + 0 6 CHH CCT
scaffold1 1052 + 0 6 CHG CTG
scaffold1 1054 - 0 7 CHG CAG
scaffold1 1056 + 0 6 CHH CAA
scaffold1 1059 + 0 6 CHH CAC
scaffold1 1061 + 0 6 CHH CAT
scaffold1 1065 - 0 7 CHH CAA
scaffold1 1067 - 0 7 CHH CAC
scaffold1 1068 - 0 7 CHH CCA
scaffold1 1069 + 0 5 CHH CTC
scaffold1 1071 + 0 5 CHH CCC
scaffold1 1072 + 0 5 CHH CCA
scaffold1 1073 + 0 5 CHH CAC
scaffold1 1075 + 0 5 CHH CCA
scaffold1 1076 + 0 5 CHH CAC
scaffold1 1078 + 0 5 CHH CCT
scaffold1 1079 + 0 5 CHH CTC
scaffold1 1081 + 0 5 CHH CTA
scaffold1 1084 + 0 5 CHG CAG
scaffold1 1086 - 0 5 CHG CTG
scaffold1 1087 - 0 5 CHH CCT
scaffold1 1088 - 0 5 CHH CCC
scaffold1 1090 - 0 4 CHH CTC
scaffold1 1092 - 0 4 CHH CAC
scaffold1 1093 + 0 4 CHH CAA
scaffold1 1096 - 0 4 CHH CTT
scaffold1 1097 - 0 4 CHH CCT
scaffold1 1098 - 0 4 CHH CCC
scaffold1 1101 + 0 2 CHG CTG
scaffold1 1103 - 0 3 CHG CAG
scaffold1 1106 + 0 2 CHH CAA
scaffold1 1109 - 0 3 CHH CTT
scaffold1 1110 + 0 2 CHH CAA
scaffold1 1114 - 0 3 CHH CAT
scaffold1 1115 + 0 2 CHH CAA
scaffold1 1118 - 0 3 CHH CTT
scaffold1 1122 - 0 3 CHH CAT
scaffold1 1123 - 0 3 CHH CCA
scaffold1 1126 - 0 2 CHH CAT
scaffold1 1129 - 0 2 CHH CTA
scaffold1 1130 + 0 2 CHH CTC
scaffold1 1132 + 0 2 CHH CCA
scaffold1 1133 + 0 2 CHH CAT
scaffold1 1136 + 0 2 CHH CAC
scaffold1 1138 + 0 2 CHG CAG
scaffold1 1140 - 0 2 CHG CTG
scaffold1 1143 + 0 2 CHG CAG
scaffold1 1145 - 0 2 CHG CTG
scaffold1 1146 + 0 2 CHG CAG
scaffold1 1148 - 0 2 CHG CTG
scaffold1 1149 + 0 1 CHH CCC
scaffold1 1150 + 0 1 CHH CCA
scaffold1 1151 + 0 1 CHH CAC
scaffold1 1153 + 0 1 CHH CAC
scaffold1 1155 + 0 1 CHH CTA
scaffold1 1158 + 0 1 CHH CAC
scaffold1 1160 + 0 1 CHH CCT
scaffold1 1161 + 0 1 CHH CTC
scaffold1 1163 + 0 1 CHH CTA
scaffold1 1170 - 0 1 CHH CAT
scaffold1 1171 - 0 1 CHH CCA
scaffold1 1172 - 0 1 CHH CCC
scaffold1 1173 - 0 1 CHH CCC
scaffold1 1174 - 0 1 CHH CCC
scaffold1 1175 - 0 1 CHH CCC
scaffold1 1176 - 0 1 CHH CCC
scaffold1 1177 - 0 1 CHH CCC
scaffold1 1178 - 0 1 CHH CCC
scaffold1 1179 - 0 1 CHH CCC
scaffold1 1180 - 0 1 CHH CCC
scaffold1 1181 - 0 1 CHH CCC
scaffold1 1185 - 0 2 CHH CAT
scaffold1 1187 - 0 2 CHH CAC
scaffold1 1189 - 0 2 CHH CAC
scaffold1 1191 - 0 3 CHH CAC
scaffold1 1193 - 0 3 CHH CAC
scaffold1 1195 - 0 3 CHH CTC
scaffold1 1199 - 0 3 CHH CAA
scaffold1 1201 - 0 3 CHH CAC
scaffold1 1203 + 0 1 CHG CTG
scaffold1 1205 - 0 3 CHG CAG
scaffold1 1207 + 0 1 CHG CAG
scaffold1 1209 - 0 3 CHG CTG
scaffold1 1211 - 0 3 CHH CAC
scaffold1 1219 + 0 2 CHH CAC
scaffold1 1221 + 0 2 CHH CAA
scaffold1 1225 + 0 2 CHH CTA
scaffold1 1228 + 0 2 CHH CTA
scaffold1 1231 + 2 0 CG CGC
scaffold1 1232 - 4 0 CG CGT
scaffold1 1233 + 0 2 CHH CAA
scaffold1 1237 + 0 3 CHH CAC
scaffold1 1239 + 0 3 CHH CAC
scaffold1 1241 + 0 3 CHH CCT
scaffold1 1242 + 0 3 CHH CTA
scaffold1 1245 + 0 3 CHG CTG
scaffold1 1247 - 0 4 CHG CAG
scaffold1 1248 + 0 3 CHH CTC
scaffold1 1250 + 0 3 CHH CAT
scaffold1 1254 + 0 3 CHG CTG
scaffold1 1256 - 0 4 CHG CAG
scaffold1 1257 - 0 4 CHH CCA
scaffold1 1259 - 0 4 CHH CAC
scaffold1 1261 - 0 4 CHH CAC
scaffold1 1263 - 0 4 CHH CTC
scaffold1 1265 - 0 4 CHH CTC
scaffold1 1266 - 0 4 CHH CCT
scaffold1 1268 - 0 4 CHH CAC
scaffold1 1269 + 3 0 CG CGT
scaffold1 1270 - 4 1 CG CGC
scaffold1 1273 - 0 5 CHH CAA
scaffold1 1274 + 3 0 CG CGT
scaffold1 1275 - 4 1 CG CGC
scaffold1 1278 - 0 6 CHH CAA
scaffold1 1279 + 3 0 CG CGT
scaffold1 1280 - 5 2 CG CGC
scaffold1 1283 - 0 7 CHH CAA
scaffold1 1284 + 0 3 CHG CCG
scaffold1 1285 + 3 0 CG CGT
scaffold1 1286 - 6 1 CG CGG
scaffold1 1289 + 0 5 CHH CAT
scaffold1 1298 - 0 7 CHH CAA
scaffold1 1299 - 0 7 CHH CCA
scaffold1 1300 + 0 7 CHH CAC
scaffold1 1302 + 0 7 CHH CCC
scaffold1 1303 + 0 7 CHH CCC
scaffold1 1304 + 0 7 CHH CCA
scaffold1 1305 + 0 7 CHH CAA
scaffold1 1311 + 0 8 CHH CAC
scaffold1 1313 + 0 8 CHH CCT
scaffold1 1314 + 0 8 CHH CTC
scaffold1 1316 + 0 8 CHH CTC
scaffold1 1318 + 7 1 CG CGC
scaffold1 1319 - 7 1 CG CGA
scaffold1 1320 + 0 8 CHH CAC
scaffold1 1322 + 0 8 CHH CAC
scaffold1 1324 + 0 8 CHG CAG
scaffold1 1326 - 0 8 CHG CTG
scaffold1 1330 - 0 8 CHH CAA
scaffold1 1331 - 0 8 CHH CCA
scaffold1 1332 + 0 8 CHG CTG
scaffold1 1334 - 0 8 CHG CAG
scaffold1 1336 - 0 8 CHH CAC
scaffold1 1338 - 0 8 CHH CAC
scaffold1 1339 + 0 8 CHH CAC
scaffold1 1341 + 0 8 CHG CCG
scaffold1 1342 + 6 2 CG CGG
scaffold1 1343 - 7 1 CG CGG
scaffold1 1344 - 0 8 CHG CCG
scaffold1 1347 + 0 8 CHH CAT
scaffold1 1350 - 1 7 CHH CAT
scaffold1 1351 + 8 0 CG CGG
scaffold1 1352 - 8 1 CG CGC
scaffold1 1353 - 0 9 CHG CCG
scaffold1 1356 + 0 8 CHG CCG
scaffold1 1357 + 7 1 CG CGC
scaffold1 1358 - 9 0 CG CGG
scaffold1 1359 + 0 8 CHH CAA
scaffold1 1363 - 0 8 CHH CAT
scaffold1 1364 + 0 8 CHG CCG
scaffold1 1365 + 7 1 CG CGT
scaffold1 1366 - 8 0 CG CGG
scaffold1 1368 - 0 8 CHH CAC
scaffold1 1370 - 2 6 CHH CAC
scaffold1 1371 + 0 7 CHH CTC
scaffold1 1373 + 0 8 CHH CCA
scaffold1 1374 + 0 8 CHG CAG
scaffold1 1376 - 0 8 CHG CTG
scaffold1 1378 - 0 9 CHH CAC
scaffold1 1380 - 0 9 CHH CAC
scaffold1 1383 - 0 9 CHH CTA
scaffold1 1384 + 8 1 CG CGA
scaffold1 1385 - 8 1 CG CGC
scaffold1 1387 + 0 9 CHH CAT
scaffold1 1390 - 0 11 CHH CAT
scaffold1 1391 - 0 11 CHH CCA
scaffold1 1392 - 0 11 CHH CCC
scaffold1 1394 + 8 1 CG CGT
scaffold1 1395 - 10 1 CG CGA
scaffold1 1397 - 0 12 CHH CAC
scaffold1 1399 + 0 9 CHH CTT
scaffold1 1403 - 1 12 CHH CTA
scaffold1 1405 - 0 12 CHH CAC
scaffold1 1407 + 0 9 CHH CCA
scaffold1 1408 + 0 9 CHH CAA
scaffold1 1411 - 0 13 CHH CTT
scaffold1 1412 - 0 14 CHH CCT
scaffold1 1413 - 0 14 CHH CCC
scaffold1 1414 + 0 8 CHH CAA
scaffold1 1419 - 0 14 CHH CAT
scaffold1 1421 - 0 14 CHH CAC
scaffold1 1422 - 0 14 CHH CCA
scaffold1 1423 - 0 14 CHH CCC
scaffold1 1425 + 0 8 CHH CCT
scaffold1 1426 + 0 8 CHG CTG
scaffold1 1428 - 0 14 CHG CAG
scaffold1 1429 + 8 0 CG CGG
scaffold1 1430 - 14 3 CG CGC
scaffold1 1431 - 0 18 CHG CCG
scaffold1 1437 + 0 8 CHG CAG
scaffold1 1439 - 0 19 CHG CTG
scaffold1 1440 - 1 18 CHH CCT
scaffold1 1443 - 0 19 CHH CAA
scaffold1 1445 - 0 19 CHH CTC
scaffold1 1448 + 0 10 CHH CCA
scaffold1 1449 + 1 9 CHH CAT
scaffold1 1454 + 1 9 CHG CAG
scaffold1 1456 - 0 19 CHG CTG
scaffold1 1457 - 0 19 CHH CCT
scaffold1 1458 + 0 12 CHG CTG
scaffold1 1460 - 0 19 CHG CAG
scaffold1 1461 - 0 19 CHH CCA
scaffold1 1462 - 0 19 CHH CCC
scaffold1 1465 - 1 19 CHH CTT
scaffold1 1466 - 0 21 CHH CCT
scaffold1 1467 - 0 21 CHH CCC
scaffold1 1468 + 0 12 CHH CTC
scaffold1 1470 + 0 13 CHH CCC
scaffold1 1471 + 0 13 CHG CCG
scaffold1 1472 + 13 0 CG CGT
scaffold1 1473 - 18 2 CG CGG
scaffold1 1475 + 12 1 CG CGT
scaffold1 1476 - 14 6 CG CGA
scaffold1 1478 - 0 19 CHH CAC
scaffold1 1480 + 0 13 CHH CCC
scaffold1 1481 + 0 13 CHH CCT
scaffold1 1482 + 2 11 CHH CTT
scaffold1 1485 - 1 18 CHH CAA
scaffold1 1486 - 0 19 CHH CCA
scaffold1 1488 - 0 20 CHH CAC
scaffold1 1490 + 0 12 CHH CCT
scaffold1 1491 + 0 12 CHH CTC
scaffold1 1493 + 0 13 CHH CAC
scaffold1 1495 + 0 14 CHG CTG
scaffold1 1497 - 0 19 CHG CAG
scaffold1 1498 - 0 20 CHH CCA
scaffold1 1499 - 0 20 CHH CCC
scaffold1 1500 - 0 20 CHH CCC
scaffold1 1502 - 0 20 CHH CTC
scaffold1 1503 - 0 20 CHH CCT
scaffold1 1506 - 0 20 CHH CTT
scaffold1 1509 - 0 20 CHH CAA
scaffold1 1513 - 0 18 CHH CAT
scaffold1 1515 + 0 14 CHH CCT
scaffold1 1516 + 0 14 CHH CTT
scaffold1 1519 + 0 13 CHG CAG
scaffold1 1521 - 0 17 CHG CTG
scaffold1 1524 + 1 11 CHH CAT
scaffold1 1527 + 10 1 CG CGG
scaffold1 1528 - 13 2 CG CGA
scaffold1 1529 - 0 15 CHG CCG
scaffold1 1531 + 0 11 CHH CCC
scaffold1 1532 + 0 11 CHH CCC
scaffold1 1533 + 0 11 CHH CCT
scaffold1 1534 + 0 11 CHH CTC
scaffold1 1536 + 0 11 CHG CAG
scaffold1 1538 - 0 15 CHG CTG
scaffold1 1545 - 0 15 CHH CAT
scaffold1 1551 + 0 11 CHH CTC
scaffold1 1553 + 9 2 CG CGG
scaffold1 1554 - 9 2 CG CGA
scaffold1 1555 - 0 10 CHG CCG
scaffold1 1560 + 0 11 CHH CTT
scaffold1 1564 + 0 11 CHG CAG
scaffold1 1566 - 0 10 CHG CTG
scaffold1 1567 - 0 10 CHH CCT
scaffold1 1569 - 0 10 CHH CAC
scaffold1 1571 + 0 10 CHH CTC
scaffold1 1573 + 0 10 CHG CCG
scaffold1 1574 + 10 0 CG CGG
scaffold1 1575 - 10 0 CG CGG
scaffold1 1576 - 0 10 CHG CCG
scaffold1 1578 - 0 10 CHH CAC
scaffold1 1581 - 0 11 CHH CTT
scaffold1 1582 - 0 11 CHH CCT
scaffold1 1585 + 0 11 CHG CTG
scaffold1 1587 - 0 11 CHG CAG
scaffold1 1588 - 0 10 CHH CCA
scaffold1 1590 - 0 10 CHH CAC
scaffold1 1593 + 0 11 CHH CCT
scaffold1 1594 + 0 11 CHH CTC
scaffold1 1596 + 0 11 CHH CCA
scaffold1 1597 + 0 11 CHH CAT
scaffold1 1600 + 1 10 CHH CAT
scaffold1 1604 + 0 13 CHH CAA
scaffold1 1608 - 0 12 CHH CTT
scaffold1 1610 + 0 13 CHH CAT
scaffold1 1614 - 0 11 CHH CAA
scaffold1 1615 + 0 12 CHG CAG
scaffold1 1617 - 1 10 CHG CTG
scaffold1 1619 + 0 11 CHH CAA
scaffold1 1624 - 0 10 CHH CAA
scaffold1 1626 - 0 10 CHH CAC
scaffold1 1627 + 0 11 CHH CTC
scaffold1 1629 + 0 10 CHH CTT
scaffold1 1632 + 0 10 CHH CCA
scaffold1 1633 + 1 9 CHG CAG
scaffold1 1635 - 0 9 CHG CTG
scaffold1 1636 + 0 10 CHH CCT
scaffold1 1637 + 0 10 CHH CTT
scaffold1 1640 - 0 9 CHH CAA
scaffold1 1642 - 0 9 CHH CAC
scaffold1 1643 - 0 9 CHH CCA
scaffold1 1645 + 0 10 CHH CAC
scaffold1 1647 + 0 10 CHG CAG
scaffold1 1649 - 0 9 CHG CTG
scaffold1 1653 - 0 9 CHH CAA
scaffold1 1654 - 0 9 CHH CCA
scaffold1 1656 - 0 8 CHH CAC
scaffold1 1659 - 0 6 CHH CTT
scaffold1 1661 + 0 9 CHH CCC
scaffold1 1662 + 0 9 CHH CCT
scaffold1 1663 + 0 9 CHH CTT
scaffold1 1668 + 0 8 CHG CTG
scaffold1 1670 - 0 5 CHG CAG
scaffold1 1672 + 0 8 CHH CCC
scaffold1 1673 + 0 8 CHH CCC
scaffold1 1674 + 0 8 CHH CCC
scaffold1 1675 + 0 8 CHH CCC
scaffold1 1676 + 0 8 CHH CCC
scaffold1 1677 + 0 8 CHH CCA
scaffold1 1678 + 0 8 CHH CAT
scaffold1 1681 - 0 5 CHH CAT
scaffold1 1683 + 0 7 CHG CTG
scaffold1 1685 - 0 5 CHG CAG
scaffold1 1687 + 0 7 CHH CCC
scaffold1 1688 + 0 7 CHH CCC
scaffold1 1689 + 0 7 CHH CCC
scaffold1 1690 + 0 7 CHH CCA
scaffold1 1691 + 0 7 CHH CAT
scaffold1 1694 - 0 7 CHH CAT
scaffold1 1697 + 0 9 CHH CAA
scaffold1 1701 - 0 7 CHH CTT
scaffold1 1702 + 0 8 CHH CCA
scaffold1 1703 + 1 7 CHG CAG
scaffold1 1705 - 0 6 CHG CTG
scaffold1 1706 + 0 8 CHH CTC
scaffold1 1708 + 0 8 CHH CCA
scaffold1 1709 + 0 8 CHH CAT
scaffold1 1713 + 0 8 CHG CAG
scaffold1 1715 - 0 6 CHG CTG
scaffold1 1720 - 0 6 CHH CAT
scaffold1 1721 - 0 6 CHH CCA
scaffold1 1723 - 0 6 CHH CAC
scaffold1 1725 - 0 6 CHH CAC
scaffold1 1727 + 0 8 CHH CCA
scaffold1 1728 + 0 8 CHG CAG
scaffold1 1730 - 0 5 CHG CTG
scaffold1 1732 - 0 5 CHH CAC
scaffold1 1734 - 0 5 CHH CAC
scaffold1 1735 - 0 5 CHH CCA
scaffold1 1737 - 0 6 CHH CAC
scaffold1 1738 - 0 6 CHH CCA
scaffold1 1740 - 0 7 CHH CTC
scaffold1 1741 - 0 7 CHH CCT
scaffold1 1744 + 0 8 CHH CTC
scaffold1 1746 + 5 4 CG CGA
scaffold1 1747 - 6 1 CG CGA
scaffold1 1749 - 0 7 CHH CTC
scaffold1 1751 - 0 8 CHH CAC
scaffold1 1753 + 0 9 CHH CCT
scaffold1 1754 + 0 9 CHG CTG
scaffold1 1756 - 0 8 CHG CAG
scaffold1 1758 - 0 8 CHH CTC
scaffold1 1759 + 0 9 CHG CAG
scaffold1 1761 - 0 7 CHG CTG
scaffold1 1763 - 0 8 CHH CTC
scaffold1 1764 + 0 9 CHH CCC
scaffold1 1765 + 0 9 CHH CCT
scaffold1 1766 + 0 9 CHG CTG
scaffold1 1768 - 0 9 CHG CAG
scaffold1 1770 + 0 9 CHH CCT
scaffold1 1771 + 0 9 CHH CTC
scaffold1 1773 + 0 8 CHH CAT
scaffold1 1776 + 0 8 CHH CCC
scaffold1 1777 + 0 8 CHH CCT
scaffold1 1778 + 0 8 CHH CTA
scaffold1 1781 + 0 8 CHG CTG
scaffold1 1783 - 0 9 CHG CAG
scaffold1 1786 + 0 8 CHH CAC
scaffold1 1788 + 0 8 CHH CCT
scaffold1 1789 + 0 8 CHH CTT
scaffold1 1793 - 0 9 CHH CAA
scaffold1 1794 - 0 9 CHH CCA
scaffold1 1795 - 0 9 CHH CCC
scaffold1 1796 - 1 8 CHH CCC
scaffold1 1798 - 0 10 CHH CAC
scaffold1 1803 - 0 10 CHH CAA
scaffold1 1804 - 0 10 CHH CCA
scaffold1 1805 - 0 10 CHH CCC
scaffold1 1807 + 0 10 CHH CCC
scaffold1 1808 + 0 10 CHH CCT
scaffold1 1809 + 0 10 CHG CTG
scaffold1 1811 - 0 11 CHG CAG
scaffold1 1815 - 0 11 CHH CAA
scaffold1 1817 - 0 11 CHH CAC
scaffold1 1819 - 0 12 CHH CTC
scaffold1 1820 + 0 9 CHH CCT
scaffold1 1821 + 0 9 CHG CTG
scaffold1 1823 - 0 12 CHG CAG
scaffold1 1824 - 0 13 CHH CCA
scaffold1 1826 + 0 7 CHH CTT
scaffold1 1829 + 0 7 CHH CTC
scaffold1 1831 + 0 7 CHH CAC
scaffold1 1833 + 0 7 CHH CCC
scaffold1 1834 + 0 7 CHH CCA
scaffold1 1835 + 0 7 CHH CAA
scaffold1 1838 + 0 8 CHH CAT
scaffold1 1841 + 0 8 CHG CAG
scaffold1 1843 - 0 13 CHG CTG
scaffold1 1846 + 0 8 CHH CCT
scaffold1 1847 + 0 8 CHG CTG
scaffold1 1849 - 0 14 CHG CAG
scaffold1 1852 - 0 14 CHH CTT
scaffold1 1854 - 0 14 CHH CTC
scaffold1 1855 - 0 14 CHH CCT
scaffold1 1856 - 0 14 CHH CCC
scaffold1 1867 - 1 14 CHH CTT
scaffold1 1868 - 0 15 CHH CCT
scaffold1 1871 - 0 15 CHH CAT
scaffold1 1872 + 0 9 CHH CCA
scaffold1 1873 + 0 8 CHH CAT
scaffold1 1877 + 5 2 CG CGT
scaffold1 1878 - 14 0 CG CGT
scaffold1 1881 - 0 13 CHH CTA
scaffold1 1883 - 0 14 CHH CTC
scaffold1 1885 - 1 13 CHH CAC
scaffold1 1889 - 0 14 CHH CAT
scaffold1 1891 - 0 15 CHH CTC
scaffold1 1894 - 0 16 CHH CTT
scaffold1 1895 + 0 6 CHH CTT
scaffold1 1902 + 0 7 CHH CTC
scaffold1 1904 + 0 7 CHH CCA
scaffold1 1905 + 0 7 CHH CAA
scaffold1 1908 + 0 7 CHG CAG
scaffold1 1910 - 0 16 CHG CTG
scaffold1 1912 - 1 15 CHH CAC
scaffold1 1915 - 0 16 CHH CAT
scaffold1 1917 - 0 15 CHH CAC
scaffold1 1920 + 0 6 CHH CCC
scaffold1 1921 + 0 6 CHH CCA
scaffold1 1922 + 0 6 CHH CAA
scaffold1 1925 + 0 6 CHH CAT
scaffold1 1928 + 0 6 CHH CCA
scaffold1 1929 + 0 6 CHH CAT
scaffold1 1932 - 1 14 CHH CAT
scaffold1 1933 - 0 15 CHH CCA
scaffold1 1936 - 1 13 CHH CAA
scaffold1 1937 + 0 5 CHH CCA
scaffold1 1938 + 0 5 CHH CAC
scaffold1 1940 + 0 5 CHH CCT
scaffold1 1941 + 0 5 CHG CTG
scaffold1 1943 - 0 15 CHG CAG
scaffold1 1945 + 0 5 CHH CCA
scaffold1 1946 + 0 5 CHH CAT
scaffold1 1949 + 0 5 CHH CAC
scaffold1 1951 + 0 5 CHH CAC
scaffold1 1953 + 0 5 CHH CCT
scaffold1 1954 + 0 5 CHH CTA
scaffold1 1957 + 0 5 CHH CCT
scaffold1 1958 + 0 5 CHH CTA
scaffold1 1964 - 0 14 CHH CAT
scaffold1 1967 + 0 6 CHG CAG
scaffold1 1969 - 0 15 CHG CTG
scaffold1 1972 + 0 6 CHH CTA
scaffold1 1978 - 0 15 CHH CAA
scaffold1 1979 - 0 15 CHH CCA
scaffold1 1981 + 0 6 CHH CCC
scaffold1 1982 + 0 6 CHH CCT
scaffold1 1983 + 0 6 CHH CTC
scaffold1 1985 + 0 6 CHH CCT
scaffold1 1986 + 0 6 CHH CTC
scaffold1 1988 + 0 6 CHH CCT
scaffold1 1989 + 0 6 CHH CTA
scaffold1 1994 - 0 15 CHH CAT
scaffold1 1997 - 0 16 CHH CAT
scaffold1 1998 - 0 16 CHH CCA
scaffold1 2000 - 0 16 CHH CTC
scaffold1 2003 + 0 6 CHG CAG
scaffold1 2005 - 0 16 CHG CTG
scaffold1 2006 - 0 16 CHH CCT
scaffold1 2007 - 0 16 CHH CCC
scaffold1 2008 - 0 16 CHH CCC
scaffold1 2010 + 0 6 CHH CTC
scaffold1 2012 + 0 6 CHH CCA
scaffold1 2013 + 0 6 CHG CAG
scaffold1 2015 - 0 15 CHG CTG
scaffold1 2017 - 0 15 CHH CAC
scaffold1 2020 - 0 13 CHH CTT
scaffold1 2021 - 0 13 CHH CCT
scaffold1 2024 + 0 6 CHG CTG
scaffold1 2026 - 0 13 CHG CAG
scaffold1 2027 - 0 13 CHH CCA
scaffold1 2029 - 0 13 CHH CAC
scaffold1 2032 + 0 3 CHH CCT
scaffold1 2033 + 0 3 CHH CTC
scaffold1 2035 + 0 3 CHH CCA
scaffold1 2036 + 0 3 CHH CAT
scaffold1 2039 + 0 3 CHH CAT
scaffold1 2043 + 0 2 CHH CAA
scaffold1 2047 - 0 12 CHH CTT
scaffold1 2049 + 0 2 CHH CAT
scaffold1 2053 - 0 11 CHH CAA
scaffold1 2056 - 0 11 CHH CTA
scaffold1 2058 + 0 2 CHH CAA
scaffold1 2063 - 0 10 CHH CAA
scaffold1 2064 - 0 10 CHH CCA
scaffold1 2065 - 0 10 CHH CCC
scaffold1 2068 + 0 2 CHH CTT
scaffold1 2071 + 0 2 CHH CCA
scaffold1 2072 + 0 2 CHG CAG
scaffold1 2074 - 0 10 CHG CTG
scaffold1 2075 + 0 2 CHH CCT
scaffold1 2076 + 0 2 CHH CTT
scaffold1 2079 - 0 8 CHH CAA
scaffold1 2081 - 0 9 CHH CAC
scaffold1 2082 - 0 9 CHH CCA
scaffold1 2084 + 0 2 CHH CAC
scaffold1 2086 + 0 2 CHG CAG
scaffold1 2088 - 0 10 CHG CTG
scaffold1 2092 - 0 10 CHH CAA
scaffold1 2093 - 0 10 CHH CCA
scaffold1 2095 - 0 10 CHH CAC
scaffold1 2098 - 0 10 CHH CTT
scaffold1 2100 + 0 1 CHH CCC
scaffold1 2101 + 0 1 CHH CCT
scaffold1 2102 + 0 1 CHH CTT
scaffold1 2107 + 0 0 CHG CTG
scaffold1 2109 - 0 10 CHG CAG
scaffold1 2111 + 0 0 CHH CCC
scaffold1 2112 + 0 0 CHH CCC
scaffold1 2113 + 0 0 CHH CCC
scaffold1 2114 + 0 0 CHH CCC
scaffold1 2115 + 0 0 CHH CCC
scaffold1 2116 + 0 0 CHH CCA
scaffold1 2117 + 0 0 CHH CAT
scaffold1 2120 - 0 8 CHH CAT
scaffold1 2122 + 0 0 CHG CTG
scaffold1 2124 - 0 6 CHG CAG
scaffold1 2125 + 0 0 CHH CCC
scaffold1 2126 + 0 0 CHH CCC
scaffold1 2127 + 0 0 CHH CCC
scaffold1 2128 + 0 0 CHH CCT
scaffold1 2129 + 0 0 CHG CTG
scaffold1 2131 - 0 6 CHG CAG
scaffold1 2133 - 0 6 CHH CAC
scaffold1 2136 + 0 0 CHG CAG
scaffold1 2138 - 0 6 CHG CTG
scaffold1 2140 - 0 6 CHH CTC
scaffold1 2141 + 0 0 CHH CCA
scaffold1 2142 + 0 0 CHG CAG
scaffold1 2144 - 0 6 CHG CTG
scaffold1 2145 + 0 0 CHH CTC
scaffold1 2147 + 0 0 CHH CCA
scaffold1 2148 + 0 0 CHH CAT
scaffold1 2152 + 0 0 CHG CAG
scaffold1 2154 - 0 5 CHG CTG
scaffold1 2156 + 0 0 CHH CAT
scaffold1 2159 - 0 5 CHH CAT
scaffold1 2160 - 0 5 CHH CCA
scaffold1 2162 - 0 5 CHH CAC
scaffold1 2164 - 0 5 CHH CAC
scaffold1 2166 + 0 0 CHH CCA
scaffold1 2167 + 0 0 CHG CAG
scaffold1 2169 - 0 5 CHG CTG
scaffold1 2171 - 0 5 CHH CAC
scaffold1 2173 - 0 4 CHH CAC
scaffold1 2174 - 0 4 CHH CCA
scaffold1 2176 - 0 4 CHH CAC
scaffold1 2177 - 0 4 CHH CCA
scaffold1 2179 - 0 4 CHH CTC
scaffold1 2180 - 0 4 CHH CCT
scaffold1 2183 + 0 0 CHH CTC
scaffold1 2185 + 0 0 CG CGA
scaffold1 2186 - 3 0 CG CGA
scaffold1 2188 - 0 3 CHH CTC
scaffold1 2190 - 0 3 CHH CAC
scaffold1 2192 + 0 0 CHH CCT
scaffold1 2193 + 0 0 CHG CTG
scaffold1 2195 - 0 3 CHG CAG
scaffold1 2196 + 0 0 CHH CAC
scaffold1 2198 + 0 0 CHG CAG
scaffold1 2200 - 0 2 CHG CTG
scaffold1 2202 - 0 2 CHH CTC
scaffold1 2203 + 0 0 CHH CCC
scaffold1 2204 + 0 0 CHH CCT
scaffold1 2205 + 0 0 CHG CTG
scaffold1 2207 - 0 2 CHG CAG
scaffold1 2209 + 0 0 CHH CCT
scaffold1 2210 + 0 0 CHH CTC
scaffold1 2212 + 0 0 CHH CCA
scaffold1 2213 + 0 0 CHH CAC
scaffold1 2215 + 0 0 CHH CCC
scaffold1 2216 + 0 0 CHH CCT
scaffold1 2217 + 0 0 CHH CTA
scaffold1 2220 + 0 0 CHG CTG
scaffold1 2222 - 0 1 CHG CAG
scaffold1 2224 - 0 1 CHH CTC
scaffold1 2225 + 0 0 CHH CTC
scaffold1 2227 + 0 0 CHH CAA
scaffold1 2230 + 0 0 CHH CCC
scaffold1 2231 + 0 0 CHH CCT
scaffold1 2232 + 0 0 CHH CTA
scaffold1 2235 + 0 0 CHG CTG
scaffold1 2237 - 0 1 CHG CAG
scaffold1 2239 + 0 0 CHH CCT
scaffold1 2240 + 0 0 CHH CTC
scaffold1 2242 + 0 0 CHH CAA
scaffold1 2245 + 0 0 CHH CCC
scaffold1 2246 + 0 0 CHH CCT
scaffold1 2247 + 0 0 CHH CTA
scaffold1 2250 + 0 0 CHG CTG
scaffold1 2252 - 0 1 CHG CAG
scaffold1 2254 + 0 0 CHH CCT
scaffold1 2255 + 0 0 CHH CTC
scaffold1 2257 + 0 0 CHH CAC
scaffold1 2259 + 0 0 CHH CCC
scaffold1 2260 + 0 0 CHH CCT
scaffold1 2261 + 0 0 CHH CTA
scaffold1 2264 + 0 0 CHG CTG
scaffold1 2266 - 0 2 CHG CAG
scaffold1 2268 + 0 0 CHH CCT
scaffold1 2269 + 0 0 CHH CTC
scaffold1 2271 + 0 0 CHH CAC
scaffold1 2273 + 0 0 CHH CCC
scaffold1 2274 + 0 0 CHH CCT
scaffold1 2275 + 0 0 CHH CTA
scaffold1 2278 + 0 1 CHG CTG
scaffold1 2280 - 0 1 CHG CAG
scaffold1 2283 + 0 1 CHH CAC
scaffold1 2285 + 0 1 CHH CTT
scaffold1 2290 - 0 1 CHH CAA
scaffold1 2291 - 0 1 CHH CCA
scaffold1 2293 - 0 1 CHH CTC
scaffold1 2295 - 0 1 CHH CAC
scaffold1 2300 - 0 1 CHH CAA
scaffold1 2301 - 0 1 CHH CCA
scaffold1 2309 - 0 1 CHH CAA
scaffold1 2311 - 0 1 CHH CAC
scaffold1 2313 - 0 1 CHH CTC
scaffold1 2314 + 0 1 CHG CCG
scaffold1 2315 + 1 0 CG CGG
scaffold1 2316 - 1 0 CG CGG
scaffold1 2317 - 0 1 CHG CCG
scaffold1 2320 + 0 1 CHH CTT
scaffold1 2323 + 0 1 CHH CTC
scaffold1 2325 + 0 1 CHH CAT
scaffold1 2328 + 0 1 CHH CCC
scaffold1 2329 + 0 1 CHH CCA
scaffold1 2330 + 0 1 CHH CAA
scaffold1 2333 + 0 1 CHH CAT
scaffold1 2336 + 0 1 CHG CAG
scaffold1 2338 - 0 1 CHG CTG
scaffold1 2341 + 0 1 CHH CCT
scaffold1 2342 + 0 1 CHG CTG
scaffold1 2344 - 0 1 CHG CAG
scaffold1 2346 + 0 1 CHH CCT
scaffold1 2347 + 0 1 CHH CTC
scaffold1 2349 + 0 1 CHH CAC
scaffold1 2351 + 0 1 CHH CAA
scaffold1 2356 - 0 1 CHH CAT
scaffold1 2357 - 0 1 CHH CCA
scaffold1 2358 + 0 1 CHH CCA
scaffold1 2359 + 0 1 CHH CAC
scaffold1 2361 + 0 1 CHH CAA
scaffold1 2367 + 0 1 CHH CCC
scaffold1 2368 + 0 1 CHH CCA
scaffold1 2369 + 0 1 CHH CAC
scaffold1 2371 + 0 1 CHG CAG
scaffold1 2373 - 0 1 CHG CTG
scaffold1 2374 + 0 1 CHH CCA
scaffold1 2375 + 0 1 CHH CAC
scaffold1 2377 + 0 1 CHH CCC
scaffold1 2378 + 0 1 CHH CCT
scaffold1 2379 + 0 1 CHH CTC
scaffold1 2381 + 0 1 CHH CCT
scaffold1 2382 + 0 1 CHH CTA
scaffold1 2387 + 0 1 CHH CCC
scaffold1 2388 + 0 1 CHH CCC
scaffold1 2389 + 0 1 CHH CCC
scaffold1 2390 + 0 1 CHH CCC
scaffold1 2391 + 0 1 CHH CCA
scaffold1 2392 + 0 1 CHH CAA
scaffold1 2397 + 0 1 CHH CTT
scaffold1 2400 + 0 1 CHH CCC
scaffold1 2401 + 0 1 CHH CCA
scaffold1 2402 + 0 1 CHG CAG
scaffold1 2404 - 0 1 CHG CTG
scaffold1 2407 - 0 1 CHH CTT
scaffold1 2409 - 0 1 CHH CTC
scaffold1 2411 - 0 1 CHH CAC
scaffold1 2412 - 0 1 CHH CCA
scaffold1 2415 - 0 1 CHH CTT
scaffold1 2416 - 0 1 CHH CCT
scaffold1 2418 - 0 1 CHH CAC
scaffold1 2419 + 0 1 CHH CTA
scaffold1 2425 + 0 1 CHG CTG
scaffold1 2427 - 0 0 CHG CAG
scaffold1 2428 - 0 0 CHH CCA
scaffold1 2429 - 0 0 CHH CCC
scaffold1 2430 - 0 0 CHH CCC
scaffold1 2431 - 0 0 CHH CCC
scaffold1 2433 + 0 1 CHH CAA
scaffold1 2436 + 0 1 CHH CTC
scaffold1 2438 + 0 1 CHH CCA
scaffold1 2439 + 0 1 CHH CAT
scaffold1 2448 - 0 0 CHH CAT
scaffold1 2451 + 0 0 CG CGA
scaffold1 2452 - 0 0 CG CGT
scaffold1 2454 - 0 0 CHH CTC
scaffold1 2456 - 0 0 CHH CTC
scaffold1 2457 - 0 0 CHH CCT
scaffold1 2459 - 0 0 CHH CTC
scaffold1 2461 - 0 0 CHH CTC
scaffold1 2462 - 0 0 CHH CCT
scaffold1 2463 - 0 0 CHH CCC
scaffold1 2464 - 0 0 CHH CCC
scaffold1 2465 - 0 0 CHH CCC
scaffold1 2466 - 0 0 CHH CCC
scaffold1 2467 + 0 0 CHH CAA
scaffold1 2470 + 0 0 CHH CAA
scaffold1 2475 + 0 0 CHH CCA
scaffold1 2476 + 0 0 CHH CAT
scaffold1 2479 + 0 0 CG CGT
scaffold1 2480 - 0 0 CG CGA
scaffold1 2486 - 0 0 CHH CTA
scaffold1 2491 - 0 0 CHH CAT
scaffold1 2492 - 0 0 CHH CCA
scaffold1 2493 - 0 0 CHH CCC
scaffold1 2494 - 0 0 CHH CCC
scaffold1 2495 - 0 0 CHH CCC
scaffold1 2497 - 0 0 CHH CTC
scaffold1 2499 - 0 0 CHH CTC
scaffold1 2500 - 0 0 CHH CCT
scaffold1 2502 - 0 0 CHH CTC
scaffold1 2504 - 0 0 CHH CTC
scaffold1 2505 - 0 0 CHH CCT
scaffold1 2507 - 0 0 CHH CAC
scaffold1 2508 - 0 0 CHH CCA
scaffold1 2509 + 0 0 CHH CAA
scaffold1 2515 + 0 0 CHH CCA
scaffold1 2516 + 0 0 CHH CAT
scaffold1 2525 - 0 0 CHH CAT
scaffold1 2526 - 0 0 CHH CCA
scaffold1 2527 + 0 0 CHH CAA
scaffold1 2531 - 0 0 CHH CTT
scaffold1 2534 - 0 0 CHH CTT
scaffold1 2535 - 0 0 CHH CCT
scaffold1 2536 - 0 0 CHH CCC
scaffold1 2537 - 0 0 CHH CCC
scaffold1 2539 - 0 0 CHH CTC
scaffold1 2540 - 0 0 CHH CCT
scaffold1 2541 - 0 0 CHH CCC
scaffold1 2542 - 0 0 CHH CCC
scaffold1 2543 - 0 0 CHH CCC
scaffold1 2544 - 0 0 CHH CCC
scaffold1 2545 + 0 0 CHH CCN
scaffold1 2546 + 0 0 CHH CNT
scaffold1 2552 - 0 0 CHH CAT
scaffold1 2553 - 0 0 CHH CCA
scaffold1 2554 + 0 2 CHH CCA
scaffold1 2555 + 0 2 CHH CAT
scaffold1 2558 - 0 0 CHH CAT
scaffold1 2561 - 0 0 CHH CTT
scaffold1 2562 - 0 0 CHH CCT
scaffold1 2563 - 0 0 CHH CCC
scaffold1 2564 - 0 0 CHH CCC
scaffold1 2565 - 0 0 CHH CCC
scaffold1 2566 - 0 0 CHH CCC
scaffold1 2569 - 0 1 CHH CAA
scaffold1 2570 - 0 1 CHH CCA
scaffold1 2573 - 0 1 CHH CAT
scaffold1 2574 - 0 1 CHH CCA
scaffold1 2575 + 0 3 CHH CAA
scaffold1 2578 + 0 4 CHH CTC
scaffold1 2580 + 0 4 CHH CCA
scaffold1 2581 + 0 4 CHH CAT
scaffold1 2590 - 0 2 CHH CAT
scaffold1 2591 - 0 2 CHH CCA
scaffold1 2592 + 0 4 CHH CCA
scaffold1 2593 + 0 4 CHH CAT
scaffold1 2596 - 0 2 CHH CAT
scaffold1 2599 - 0 3 CHH CTT
scaffold1 2600 - 0 3 CHH CCT
scaffold1 2601 - 0 3 CHH CCC
scaffold1 2602 - 0 3 CHH CCC
scaffold1 2603 - 0 3 CHH CCC
scaffold1 2604 - 0 3 CHH CCC
scaffold1 2607 - 0 3 CHH CAA
scaffold1 2608 - 0 4 CHH CCA
scaffold1 2609 - 0 4 CHH CCC
scaffold1 2611 - 0 4 CHH CAC
scaffold1 2612 - 0 4 CHH CCA
scaffold1 2613 + 0 4 CHH CAA
scaffold1 2616 + 0 4 CHH CTC
scaffold1 2618 + 0 4 CHH CAA
scaffold1 2628 - 0 6 CHH CAT
scaffold1 2629 - 0 6 CHH CCA
scaffold1 2630 + 0 6 CHH CCA
scaffold1 2631 + 0 6 CHH CAT
scaffold1 2634 - 0 6 CHH CAT
scaffold1 2635 - 0 6 CHH CCA
scaffold1 2640 - 0 6 CHH CAA
scaffold1 2645 - 0 6 CHH CAT
scaffold1 2646 - 0 6 CHH CCA
scaffold1 2647 - 0 6 CHH CCC
scaffold1 2652 + 0 8 CHH CCA
scaffold1 2653 + 0 8 CHH CAT
scaffold1 2656 + 0 8 CHH CAA
scaffold1 2659 - 0 7 CHH CTT
scaffold1 2660 + 0 8 CHH CTC
scaffold1 2662 + 0 8 CHH CAC
scaffold1 2664 + 0 9 CHH CAT
scaffold1 2668 + 8 1 CG CGA
scaffold1 2669 - 6 2 CG CGT
scaffold1 2672 - 0 8 CHH CAT
scaffold1 2675 + 9 1 CG CGG
scaffold1 2676 - 7 1 CG CGA
scaffold1 2677 - 0 8 CHG CCG
scaffold1 2678 - 0 8 CHH CCC
scaffold1 2679 - 0 8 CHH CCC
scaffold1 2682 + 0 13 CHH CAC
scaffold1 2684 + 0 13 CHG CAG
scaffold1 2686 - 0 8 CHG CTG
scaffold1 2691 + 11 1 CG CGG
scaffold1 2692 - 5 3 CG CGA
scaffold1 2693 - 0 8 CHG CCG
scaffold1 2694 + 0 13 CHH CCA
scaffold1 2695 + 0 13 CHH CAC
scaffold1 2697 + 0 13 CHH CAT
scaffold1 2700 + 0 13 CHH CAC
scaffold1 2702 + 0 12 CHH CAT
scaffold1 2705 - 0 8 CHH CAT
scaffold1 2708 + 0 13 CHG CTG
scaffold1 2710 - 0 8 CHG CAG
scaffold1 2713 - 0 8 CHH CTT
scaffold1 2716 - 0 8 CHH CAA
scaffold1 2718 - 0 8 CHH CTC
scaffold1 2728 - 0 9 CHH CTT
scaffold1 2729 + 0 15 CHH CAA
scaffold1 2734 - 0 10 CHH CTA
scaffold1 2736 - 0 10 CHH CTC
scaffold1 2737 - 0 10 CHH CCT
scaffold1 2739 - 0 9 CHH CAC
scaffold1 2741 + 0 15 CHH CTA
scaffold1 2747 + 0 15 CHG CAG
scaffold1 2749 - 0 10 CHG CTG
scaffold1 2752 - 0 10 CHH CTT
scaffold1 2754 + 0 16 CHH CCC
scaffold1 2755 + 0 15 CHH CCA
scaffold1 2756 + 1 14 CHH CAC
scaffold1 2758 + 0 15 CHG CCG
scaffold1 2759 + 7 8 CG CGG
scaffold1 2760 - 2 8 CG CGG
scaffold1 2761 - 0 10 CHG CCG
scaffold1 2763 - 0 11 CHH CAC
scaffold1 2764 - 0 11 CHH CCA
scaffold1 2766 - 0 11 CHH CTC
scaffold1 2770 - 0 11 CHH CAT
scaffold1 2772 + 7 8 CG CGT
scaffold1 2773 - 6 5 CG CGT
scaffold1 2775 + 0 15 CHH CCT
scaffold1 2776 + 0 14 CHG CTG
scaffold1 2778 - 0 10 CHG CAG
scaffold1 2780 + 0 13 CHG CTG
scaffold1 2782 - 0 11 CHG CAG
scaffold1 2783 - 0 11 CHH CCA
scaffold1 2786 - 0 11 CHH CAA
scaffold1 2787 + 0 16 CHH CTA
scaffold1 2791 - 0 11 CHH CTT
scaffold1 2792 - 0 11 CHH CCT
scaffold1 2793 - 0 11 CHH CCC
scaffold1 2798 + 0 17 CHH CTT
scaffold1 2802 - 0 13 CHH CAA
scaffold1 2806 + 0 17 CHH CCT
scaffold1 2807 + 0 16 CHH CTT
scaffold1 2810 + 0 16 CHH CCA
scaffold1 2811 + 0 16 CHG CAG
scaffold1 2813 - 0 13 CHG CTG
scaffold1 2814 - 0 13 CHH CCT
scaffold1 2819 + 0 16 CHG CTG
scaffold1 2821 - 0 14 CHG CAG
scaffold1 2823 - 0 14 CHH CTC
scaffold1 2829 - 0 14 CHH CAT
scaffold1 2833 - 0 15 CHH CAA
scaffold1 2834 + 0 17 CHG CCG
scaffold1 2835 + 10 7 CG CGA
scaffold1 2836 - 7 8 CG CGG
scaffold1 2840 - 1 14 CHH CAA
scaffold1 2842 - 0 14 CHH CAC
scaffold1 2845 - 0 15 CHH CTT
scaffold1 2846 - 0 15 CHH CCT
scaffold1 2849 - 0 15 CHH CTT
scaffold1 2853 - 0 15 CHH CAA
scaffold1 2857 + 0 17 CHH CAA
scaffold1 2861 - 0 13 CHH CAT
scaffold1 2866 + 0 17 CHH CCC
scaffold1 2867 + 0 17 CHH CCC
scaffold1 2868 + 0 17 CHH CCA
scaffold1 2869 + 0 17 CHH CAT
scaffold1 2873 + 0 15 CHH CAA
scaffold1 2877 - 0 13 CHH CAT
scaffold1 2878 + 0 15 CHH CAC
scaffold1 2880 + 0 15 CHH CTC
scaffold1 2882 + 0 15 CHG CTG
scaffold1 2884 - 0 13 CHG CAG
scaffold1 2888 + 0 16 CHG CTG
scaffold1 2890 - 0 12 CHG CAG
scaffold1 2891 - 0 12 CHH CCA
scaffold1 2894 + 0 15 CHH CAC
scaffold1 2896 + 0 15 CHG CCG
scaffold1 2897 + 6 9 CG CGA
scaffold1 2898 - 3 10 CG CGG
scaffold1 2901 + 0 15 CHH CCC
scaffold1 2902 + 0 15 CHG CCG
scaffold1 2903 + 6 9 CG CGG
scaffold1 2904 - 4 9 CG CGG
scaffold1 2905 - 0 13 CHG CCG
scaffold1 2906 - 0 13 CHH CCC
scaffold1 2909 + 0 14 CHH CAC
scaffold1 2911 + 0 13 CHH CAT
scaffold1 2914 - 0 12 CHH CAT
scaffold1 2916 + 0 12 CHH CAT
scaffold1 2921 - 0 13 CHH CAT
scaffold1 2924 + 0 9 CHH CTA
scaffold1 2928 - 0 12 CHH CAT
scaffold1 2932 + 0 9 CHH CTT
scaffold1 2937 + 0 9 CHH CCA
scaffold1 2938 + 0 9 CHH CAT
scaffold1 2941 + 0 9 CHH CAC
scaffold1 2943 + 0 8 CHH CCA
scaffold1 2944 + 1 7 CHG CAG
scaffold1 2946 - 0 12 CHG CTG
scaffold1 2947 + 0 8 CHH CCA
scaffold1 2948 + 1 8 CHG CAG
scaffold1 2950 - 0 12 CHG CTG
scaffold1 2953 + 0 8 CHH CTT
scaffold1 2957 + 0 8 CHH CAA
scaffold1 2964 + 0 8 CHH CAA
scaffold1 2967 + 0 9 CHH CAA
scaffold1 2970 + 0 9 CHH CCT
scaffold1 2971 + 0 8 CHH CTC
scaffold1 2973 + 0 8 CHH CAA
scaffold1 2979 + 0 9 CHH CAT
scaffold1 2986 + 3 6 CG CGT
scaffold1 2987 - 4 9 CG CGT
scaffold1 2992 - 0 14 CHH CAA
scaffold1 2994 - 0 13 CHH CTC
scaffold1 2997 - 0 13 CHH CTT
scaffold1 3000 + 0 8 CHH CTC
scaffold1 3002 + 0 9 CHH CCT
scaffold1 3003 + 0 10 CHH CTC
scaffold1 3005 + 3 7 CG CGT
scaffold1 3006 - 3 9 CG CGA
scaffold1 3008 - 0 12 CHH CAC
scaffold1 3011 + 0 11 CHG CCG
scaffold1 3012 + 7 5 CG CGG
scaffold1 3013 - 5 7 CG CGG
scaffold1 3014 - 0 12 CHG CCG
scaffold1 3015 - 0 12 CHH CCC
scaffold1 3019 + 0 12 CHG CAG
scaffold1 3021 - 0 12 CHG CTG
scaffold1 3023 - 0 12 CHH CTC
scaffold1 3025 - 0 12 CHH CTC
scaffold1 3029 + 0 11 CHH CCT
scaffold1 3030 + 0 12 CHH CTA
scaffold1 3037 + 0 12 CHH CAA
scaffold1 3041 - 0 12 CHH CAT
scaffold1 3050 - 0 10 CHH CAT
scaffold1 3054 - 0 11 CHH CAA
scaffold1 3055 - 0 11 CHH CCA
scaffold1 3058 + 0 12 CHH CCC
scaffold1 3059 + 0 12 CHH CCT
scaffold1 3060 + 0 12 CHH CTC
scaffold1 3062 + 0 12 CHH CAT
scaffold1 3065 + 0 12 CHG CTG
scaffold1 3067 - 0 9 CHG CAG
scaffold1 3075 - 0 9 CHH CTT
scaffold1 3077 - 0 9 CHH CAC
scaffold1 3078 - 0 9 CHH CCA
scaffold1 3080 + 0 12 CHH CAT
scaffold1 3088 - 0 8 CHH CTT
scaffold1 3092 - 0 9 CHH CAA
scaffold1 3093 - 0 9 CHH CCA
scaffold1 3094 - 0 9 CHH CCC
scaffold1 3095 - 0 9 CHH CCC
scaffold1 3098 + 3 6 CG CGC
scaffold1 3099 - 4 5 CG CGA
scaffold1 3100 + 0 7 CHG CAG
scaffold1 3102 - 0 10 CHG CTG
scaffold1 3104 + 0 7 CHH CTC
scaffold1 3106 + 0 7 CHG CTG
scaffold1 3108 - 0 9 CHG CAG
scaffold1 3113 + 0 7 CHG CAG
scaffold1 3115 - 0 8 CHG CTG
scaffold1 3117 - 0 8 CHH CTC
scaffold1 3122 - 0 8 CHH CTT
scaffold1 3126 + 0 5 CHH CAT
scaffold1 3130 + 0 5 CHG CAG
scaffold1 3132 - 0 8 CHG CTG
scaffold1 3134 + 0 5 CHH CAC
scaffold1 3136 + 0 5 CHH CAT
scaffold1 3139 - 0 8 CHH CAT
scaffold1 3140 - 0 8 CHH CCA
scaffold1 3141 + 0 4 CHH CAC
scaffold1 3143 + 0 4 CHH CTC
scaffold1 3145 + 0 4 CHH CTC
scaffold1 3147 + 0 4 CHH CCC
scaffold1 3148 + 0 4 CHH CCT
scaffold1 3149 + 0 4 CHH CTC
scaffold1 3151 + 0 4 CHH CAC
scaffold1 3153 + 1 3 CG CGT
scaffold1 3154 - 1 7 CG CGT
scaffold1 3156 - 0 8 CHH CAC
scaffold1 3160 + 0 4 CHH CAC
scaffold1 3162 + 0 4 CHH CAC
scaffold1 3164 + 0 4 CHG CAG
scaffold1 3166 - 0 9 CHG CTG
scaffold1 3167 + 0 3 CHH CCC
scaffold1 3168 + 0 3 CHH CCC
scaffold1 3169 + 0 3 CHH CCA
scaffold1 3170 + 0 3 CHH CAT
scaffold1 3192 + 0 4 CHG CTG
scaffold1 3194 - 0 7 CHG CAG
scaffold1 3197 + 1 2 CHH CAT
scaffold1 3201 + 0 1 CHH CAC
scaffold1 3203 + 0 1 CHH CAC
scaffold1 3205 + 0 1 CHG CTG
scaffold1 3207 - 1 7 CHG CAG
scaffold1 3208 - 0 8 CHH CCA
scaffold1 3210 + 0 1 CHH CAC
scaffold1 3212 + 0 1 CHH CTT
scaffold1 3215 + 0 1 CHH CCT
scaffold1 3216 + 0 1 CHH CTC
scaffold1 3218 + 0 1 CHG CCG
scaffold1 3219 + 0 1 CG CGG
scaffold1 3220 - 2 5 CG CGG
scaffold1 3221 - 0 7 CHG CCG
scaffold1 3222 - 0 7 CHH CCC
scaffold1 3225 + 0 1 CHH CTC
scaffold1 3227 + 0 1 CG CGG
scaffold1 3228 - 1 6 CG CGA
scaffold1 3229 - 0 7 CHG CCG
scaffold1 3230 + 0 2 CG CGC
scaffold1 3231 - 2 5 CG CGC
scaffold1 3232 + 0 2 CHH CAC
scaffold1 3234 + 0 2 CHH CTC
scaffold1 3236 + 0 3 CHH CAC
scaffold1 3238 + 0 4 CHG CCG
scaffold1 3239 + 0 4 CG CGT
scaffold1 3240 - 1 7 CG CGG
scaffold1 3243 + 0 4 CG CGA
scaffold1 3244 - 0 8 CG CGT
scaffold1 3247 + 0 4 CHG CTG
scaffold1 3249 - 0 7 CHG CAG
scaffold1 3252 + 0 4 CHH CAT
scaffold1 3256 + 0 4 CHH CTC
scaffold1 3258 + 0 4 CHG CCG
scaffold1 3259 + 0 4 CG CGC
scaffold1 3260 - 1 8 CG CGG
scaffold1 3261 + 0 4 CG CGT
scaffold1 3262 - 1 8 CG CGC
scaffold1 3265 - 0 9 CHH CAA
scaffold1 3267 + 0 4 CG CGT
scaffold1 3268 - 1 8 CG CGA
scaffold1 3270 + 0 4 CHH CCT
scaffold1 3271 + 0 4 CHH CTC
scaffold1 3273 + 0 4 CG CGG
scaffold1 3274 - 1 9 CG CGA
scaffold1 3275 - 0 10 CHG CCG
scaffold1 3276 + 0 4 CHH CAT
scaffold1 3280 - 0 10 CHH CTA
scaffold1 3281 - 0 10 CHH CCT
scaffold1 3282 - 0 10 CHH CCC
scaffold1 3285 + 0 4 CHG CAG
scaffold1 3287 - 0 10 CHG CTG
scaffold1 3291 + 0 4 CHG CAG
scaffold1 3293 - 0 10 CHG CTG
scaffold1 3295 + 0 4 CHG CTG
scaffold1 3297 - 0 11 CHG CAG
scaffold1 3299 + 0 4 CHG CTG
scaffold1 3301 - 0 11 CHG CAG
scaffold1 3302 - 0 11 CHH CCA
scaffold1 3304 - 0 11 CHH CAC
scaffold1 3305 + 0 4 CHG CCG
scaffold1 3306 + 0 4 CG CGG
scaffold1 3307 - 1 10 CG CGG
scaffold1 3308 - 0 11 CHG CCG
scaffold1 3309 + 0 4 CHG CCG
scaffold1 3310 + 0 3 CG CGC
scaffold1 3311 - 1 10 CG CGG
scaffold1 3312 + 0 3 CG CGC
scaffold1 3313 - 1 10 CG CGC
scaffold1 3314 + 0 3 CG CGC
scaffold1 3315 - 1 10 CG CGC
scaffold1 3316 + 0 3 CHH CCC
scaffold1 3317 + 0 3 CHH CCC
scaffold1 3318 + 0 3 CHG CCG
scaffold1 3319 + 0 3 CG CGT
scaffold1 3320 - 1 10 CG CGG
scaffold1 3322 + 0 3 CHG CTG
scaffold1 3324 - 0 11 CHG CAG
scaffold1 3326 - 0 11 CHH CTC
scaffold1 3327 + 0 3 CG CGC
scaffold1 3328 - 1 10 CG CGC
scaffold1 3329 + 0 3 CHH CCT
scaffold1 3330 + 0 3 CHG CTG
scaffold1 3332 - 0 11 CHG CAG
scaffold1 3334 + 0 3 CHH CAC
scaffold1 3336 + 0 3 CHH CAC
scaffold1 3338 + 0 3 CG CGC
scaffold1 3339 - 0 11 CG CGT
scaffold1 3340 + 0 3 CHH CAC
scaffold1 3342 + 0 4 CHG CAG
scaffold1 3344 - 0 11 CHG CTG
scaffold1 3346 - 0 11 CHH CAC
scaffold1 3347 + 0 4 CHG CAG
scaffold1 3349 - 0 11 CHG CTG
scaffold1 3352 + 0 4 CHH CCT
scaffold1 3353 + 0 4 CHH CTC
scaffold1 3355 + 0 5 CHG CCG
scaffold1 3356 + 0 5 CG CGC
scaffold1 3357 - 1 10 CG CGG
scaffold1 3358 + 0 5 CHH CTC
scaffold1 3360 + 0 5 CG CGC
scaffold1 3361 - 0 10 CG CGA
scaffold1 3362 + 0 4 CHH CCC
scaffold1 3363 + 0 4 CHH CCC
scaffold1 3364 + 0 4 CHG CCG
scaffold1 3365 + 0 4 CG CGT
scaffold1 3366 - 1 9 CG CGG
scaffold1 3368 + 0 4 CHH CAC
scaffold1 3370 + 0 4 CHG CTG
scaffold1 3372 - 0 13 CHG CAG
scaffold1 3373 + 0 4 CHG CAG
scaffold1 3375 - 0 15 CHG CTG
scaffold1 3376 + 0 4 CHG CAG
scaffold1 3378 - 0 14 CHG CTG
scaffold1 3379 + 0 5 CHG CTG
scaffold1 3381 - 0 13 CHG CAG
scaffold1 3382 + 0 5 CHH CAT
scaffold1 3387 + 0 5 CHH CCT
scaffold1 3388 + 0 5 CHH CTT
scaffold1 3391 + 0 5 CHH CTT
scaffold1 3395 + 0 5 CHG CAG
scaffold1 3397 - 0 15 CHG CTG
scaffold1 3399 + 0 5 CHG CAG
scaffold1 3401 - 0 15 CHG CTG
scaffold1 3402 - 0 15 CHH CCT
scaffold1 3403 - 0 15 CHH CCC
scaffold1 3404 - 0 15 CHH CCC
scaffold1 3412 + 1 4 CG CGT
scaffold1 3413 - 0 18 CG CGA
scaffold1 3416 + 0 6 CHH CCA
scaffold1 3417 + 0 5 CHH CAT
scaffold1 3420 + 0 5 CHH CCC
scaffold1 3421 + 0 5 CHH CCT
scaffold1 3422 + 0 5 CHH CTC
scaffold1 3424 + 0 5 CHH CAC
scaffold1 3426 + 0 5 CHG CTG
scaffold1 3428 - 0 24 CHG CAG
scaffold1 3430 - 0 26 CHH CTC
scaffold1 3431 + 0 7 CHG CCG
scaffold1 3432 + 3 4 CG CGA
scaffold1 3433 - 4 22 CG CGG
scaffold1 3435 - 0 26 CHH CTC
scaffold1 3436 + 2 4 CG CGC
scaffold1 3437 - 6 21 CG CGC
scaffold1 3438 + 3 5 CG CGA
scaffold1 3439 - 7 22 CG CGC
scaffold1 3442 + 0 8 CHH CAT
scaffold1 3445 + 0 8 CHG CTG
scaffold1 3447 - 0 31 CHG CAG
scaffold1 3448 + 0 8 CHG CAG
scaffold1 3450 - 0 30 CHG CTG
scaffold1 3452 - 0 31 CHH CTC
scaffold1 3454 + 0 9 CHH CCC
scaffold1 3455 + 0 9 CHH CCA
scaffold1 3456 + 0 9 CHG CAG
scaffold1 3458 - 0 31 CHG CTG
scaffold1 3459 + 1 10 CHH CCA
scaffold1 3460 + 0 11 CHH CAC
scaffold1 3462 + 0 11 CHH CCC
scaffold1 3463 + 0 11 CHG CCG
scaffold1 3464 + 2 9 CG CGA
scaffold1 3465 - 10 24 CG CGG
scaffold1 3467 + 0 11 CHG CTG
scaffold1 3469 - 0 34 CHG CAG
scaffold1 3470 + 0 11 CHH CTC
scaffold1 3472 + 2 9 CG CGT
scaffold1 3473 - 4 30 CG CGA
scaffold1 3475 + 0 11 CHH CAC
scaffold1 3477 + 0 11 CHH CCC
scaffold1 3478 + 0 11 CHH CCT
scaffold1 3479 + 0 11 CHH CTA
scaffold1 3483 + 0 11 CHH CCC
scaffold1 3484 + 0 11 CHH CCT
scaffold1 3485 + 0 11 CHH CTA
scaffold1 3488 + 0 11 CHG CAG
scaffold1 3490 - 0 35 CHG CTG
scaffold1 3494 + 1 10 CG CGT
scaffold1 3495 - 6 29 CG CGT
scaffold1 3498 + 0 11 CHH CCA
scaffold1 3499 + 0 11 CHH CAT
scaffold1 3502 + 0 11 CHH CCC
scaffold1 3503 + 0 10 CHH CCT
scaffold1 3504 + 0 10 CHH CTC
scaffold1 3506 + 0 10 CHH CAC
scaffold1 3508 + 0 10 CHG CTG
scaffold1 3510 - 0 33 CHG CAG
scaffold1 3512 - 0 33 CHH CTC
scaffold1 3513 + 0 10 CHG CCG
scaffold1 3514 + 3 7 CG CGA
scaffold1 3515 - 13 19 CG CGG
scaffold1 3517 - 0 32 CHH CTC
scaffold1 3518 + 3 7 CG CGC
scaffold1 3519 - 16 16 CG CGC
scaffold1 3520 + 2 8 CG CGA
scaffold1 3521 - 12 20 CG CGC
scaffold1 3524 + 1 9 CHH CAT
scaffold1 3527 + 0 9 CHG CTG
scaffold1 3529 - 0 32 CHG CAG
scaffold1 3530 + 0 10 CHG CAG
scaffold1 3532 - 0 32 CHG CTG
scaffold1 3534 - 0 32 CHH CTC
scaffold1 3536 + 0 9 CHH CCC
scaffold1 3537 + 0 9 CHH CCA
scaffold1 3538 + 0 9 CHG CAG
scaffold1 3540 - 0 29 CHG CTG
scaffold1 3541 + 0 9 CHH CCA
scaffold1 3542 + 0 9 CHH CAC
scaffold1 3544 + 1 8 CHH CCC
scaffold1 3545 + 0 9 CHG CCG
scaffold1 3546 + 2 7 CG CGA
scaffold1 3547 - 7 15 CG CGG
scaffold1 3549 + 0 8 CHG CTG
scaffold1 3551 - 1 20 CHG CAG
scaffold1 3552 + 0 7 CHH CTC
scaffold1 3554 + 1 6 CG CGT
scaffold1 3555 - 5 12 CG CGA
scaffold1 3557 + 1 6 CHH CAC
scaffold1 3559 + 0 5 CHH CCC
scaffold1 3560 + 0 5 CHH CCT
scaffold1 3561 + 0 5 CHH CTA
scaffold1 3565 + 0 5 CHH CCC
scaffold1 3566 + 0 5 CHH CCT
scaffold1 3567 + 0 5 CHH CTA
scaffold1 3570 + 0 5 CHG CAG
scaffold1 3572 - 0 13 CHG CTG
scaffold1 3576 + 0 4 CHH CTT
scaffold1 3579 + 0 4 CHG CTG
scaffold1 3581 - 0 11 CHG CAG
scaffold1 3584 + 0 2 CHH CAA
scaffold1 3588 - 0 9 CHH CAT
scaffold1 3592 + 0 2 CHG CTG
scaffold1 3594 - 0 9 CHG CAG
scaffold1 3597 + 0 1 CHH CCC
scaffold1 3598 + 0 1 CHH CCC
scaffold1 3599 + 0 1 CHH CCA
scaffold1 3600 + 0 1 CHG CAG
scaffold1 3602 - 0 9 CHG CTG
scaffold1 3606 - 0 9 CHH CAT
scaffold1 3608 + 0 1 CHH CAA
scaffold1 3615 + 0 0 CG CGC
scaffold1 3616 - 3 6 CG CGA
scaffold1 3617 + 0 0 CHG CAG
scaffold1 3619 - 0 9 CHG CTG
scaffold1 3620 + 0 0 CHH CTT
scaffold1 3623 + 0 0 CHH CCA
scaffold1 3624 + 0 0 CHG CAG
scaffold1 3626 - 0 9 CHG CTG
scaffold1 3627 + 0 0 CHH CCC
scaffold1 3628 + 0 0 CHH CCT
scaffold1 3629 + 0 0 CHH CTT
scaffold1 3632 - 0 9 CHH CAA
scaffold1 3633 - 0 9 CHH CCA
scaffold1 3636 - 0 9 CHH CAT
scaffold1 3638 - 0 9 CHH CAC
scaffold1 3640 + 0 0 CHH CAT
scaffold1 3643 + 0 0 CHG CTG
scaffold1 3645 - 0 7 CHG CAG
scaffold1 3647 + 0 0 CHH CCC
scaffold1 3648 + 0 0 CHH CCC
scaffold1 3649 + 0 0 CHH CCT
scaffold1 3650 + 0 0 CHH CTC
scaffold1 3652 + 0 0 CHH CCC
scaffold1 3653 + 0 0 CHH CCC
scaffold1 3654 + 0 0 CHH CCC
scaffold1 3655 + 0 0 CHH CCC
scaffold1 3656 + 0 0 CHH CCA
scaffold1 3657 + 0 0 CHH CAT
scaffold1 3660 - 0 6 CHH CAT
scaffold1 3662 + 0 0 CHH CTT
scaffold1 3665 + 0 0 CHH CCC
scaffold1 3666 + 0 0 CHH CCA
scaffold1 3667 + 0 0 CHH CAT
scaffold1 3670 + 0 0 CHH CAN
scaffold1 4456 + 0 0 CHH CCC
scaffold1 4457 + 0 0 CHH CCC
scaffold1 4458 + 0 0 CHH CCT
scaffold1 4459 + 0 0 CHH CTA
scaffold1 4462 + 0 0 CHH CAA
scaffold1 4467 + 0 0 CHH CAA
scaffold1 4472 + 0 0 CHG CAG
scaffold1 4474 - 0 3 CHG CTG
scaffold1 4476 - 0 4 CHH CTC
scaffold1 4477 + 0 0 CHH CCC
scaffold1 4478 + 0 0 CHH CCC
scaffold1 4479 + 0 0 CHH CCC
scaffold1 4480 + 0 0 CHH CCT
scaffold1 4481 + 0 0 CHH CTC
scaffold1 4483 + 0 0 CHH CTC
scaffold1 4485 + 0 1 CHH CCT
scaffold1 4486 + 0 2 CHG CTG
scaffold1 4488 - 0 5 CHG CAG
scaffold1 4489 + 0 3 CHH CTT
scaffold1 4493 + 0 4 CHH CCT
scaffold1 4494 + 0 4 CHH CTT
scaffold1 4497 - 0 6 CHH CAA
scaffold1 4500 - 0 6 CHH CAA
scaffold1 4501 + 0 4 CHG CAG
scaffold1 4503 - 0 6 CHG CTG
scaffold1 4504 - 0 6 CHH CCT
scaffold1 4505 - 0 6 CHH CCC
scaffold1 4507 - 0 6 CHH CTC
scaffold1 4508 - 0 6 CHH CCT
scaffold1 4510 - 0 6 CHH CTC
scaffold1 4511 - 0 6 CHH CCT
scaffold1 4512 + 0 5 CHG CTG
scaffold1 4514 - 0 6 CHG CAG
scaffold1 4516 - 0 7 CHH CAC
scaffold1 4518 - 0 7 CHH CTC
scaffold1 4519 - 0 7 CHH CCT
scaffold1 4520 + 2 3 CG CGG
scaffold1 4521 - 4 3 CG CGC
scaffold1 4522 - 0 8 CHG CCG
scaffold1 4523 + 0 5 CHH CAC
scaffold1 4525 + 3 2 CG CGT
scaffold1 4526 - 8 0 CG CGT
scaffold1 4528 + 0 7 CHG CAG
scaffold1 4530 - 1 7 CHG CTG
scaffold1 4532 + 0 7 CHH CCC
scaffold1 4533 + 0 7 CHG CCG
scaffold1 4534 + 7 0 CG CGG
scaffold1 4535 - 7 2 CG CGG
scaffold1 4536 - 1 8 CHG CCG
scaffold1 4538 - 1 8 CHH CAC
scaffold1 4541 + 0 6 CHG CTG
scaffold1 4543 - 0 9 CHG CAG
scaffold1 4546 - 0 10 CHH CTA
scaffold1 4548 + 7 0 CG CGA
scaffold1 4549 - 5 3 CG CGA
scaffold1 4553 - 0 10 CHH CAA
scaffold1 4554 - 0 10 CHH CCA
scaffold1 4557 - 0 10 CHH CTA
scaffold1 4558 - 0 10 CHH CCT
scaffold1 4559 - 0 10 CHH CCC
scaffold1 4561 + 0 7 CHG CTG
scaffold1 4563 - 0 10 CHG CAG
scaffold1 4564 + 0 7 CHG CTG
scaffold1 4566 - 0 10 CHG CAG
scaffold1 4567 + 0 8 CHG CAG
scaffold1 4569 - 0 10 CHG CTG
scaffold1 4571 + 0 8 CHH CCT
scaffold1 4572 + 0 8 CHH CTT
scaffold1 4575 + 0 8 CHH CCC
scaffold1 4576 + 0 8 CHH CCA
scaffold1 4577 + 0 8 CHH CAA
scaffold1 4581 + 6 2 CG CGA
scaffold1 4582 - 9 3 CG CGA
scaffold1 4585 + 0 8 CHH CCT
scaffold1 4586 + 0 8 CHG CTG
scaffold1 4588 - 0 12 CHG CAG
scaffold1 4589 + 0 8 CHH CAC
scaffold1 4591 + 0 8 CHH CAA
scaffold1 4595 + 0 8 CHH CCT
scaffold1 4596 + 0 8 CHH CTT
scaffold1 4600 + 8 1 CG CGG
scaffold1 4601 - 7 5 CG CGA
scaffold1 4602 - 0 12 CHG CCG
scaffold1 4603 + 0 10 CHH CCA
scaffold1 4604 + 0 10 CHG CAG
scaffold1 4606 - 0 12 CHG CTG
scaffold1 4607 + 9 1 CG CGT
scaffold1 4608 - 11 1 CG CGC
scaffold1 4611 + 0 9 CHH CAC
scaffold1 4613 + 0 9 CHG CTG
scaffold1 4615 - 0 12 CHG CAG
scaffold1 4619 - 0 11 CHH CTT
scaffold1 4621 - 0 11 CHH CTC
scaffold1 4622 + 8 1 CG CGC
scaffold1 4623 - 9 2 CG CGC
scaffold1 4624 + 0 9 CHG CTG
scaffold1 4626 - 1 9 CHG CAG
scaffold1 4627 - 0 10 CHH CCA
scaffold1 4628 + 0 10 CHG CCG
scaffold1 4629 + 10 0 CG CGA
scaffold1 4630 - 9 1 CG CGG
scaffold1 4634 - 1 9 CHH CTT
scaffold1 4635 - 0 10 CHH CCT
scaffold1 4638 + 0 11 CHG CCG
scaffold1 4639 + 11 0 CG CGG
scaffold1 4640 - 11 0 CG CGG
scaffold1 4641 - 0 12 CHG CCG
scaffold1 4642 - 0 12 CHH CCC
scaffold1 4644 - 0 12 CHH CAC
scaffold1 4645 + 10 2 CG CGG
scaffold1 4646 - 6 3 CG CGC
scaffold1 4647 - 1 10 CHG CCG
scaffold1 4648 - 0 11 CHH CCC
scaffold1 4649 + 13 0 CG CGC
scaffold1 4650 - 11 0 CG CGC
scaffold1 4651 + 0 12 CHG CAG
scaffold1 4653 - 0 12 CHG CTG
scaffold1 4655 + 0 12 CHH CTC
scaffold1 4657 + 0 12 CHG CAG
scaffold1 4659 - 0 12 CHG CTG
scaffold1 4660 + 0 12 CHH CTA
scaffold1 4663 + 0 12 CHH CAC
scaffold1 4665 + 11 1 CG CGG
scaffold1 4666 - 11 1 CG CGT
scaffold1 4667 - 0 12 CHG CCG
scaffold1 4669 + 0 11 CHG CTG
scaffold1 4671 - 0 11 CHG CAG
scaffold1 4672 + 0 11 CHH CAT
scaffold1 4675 + 0 13 CHG CCG
scaffold1 4676 + 13 0 CG CGA
scaffold1 4677 - 8 2 CG CGG
scaffold1 4679 + 0 13 CHG CAG
scaffold1 4681 - 1 8 CHG CTG
scaffold1 4683 - 1 9 CHH CTC
scaffold1 4686 - 0 10 CHH CAT
scaffold1 4687 + 0 13 CHG CAG
scaffold1 4689 - 0 10 CHG CTG
scaffold1 4691 + 0 13 CHG CCG
scaffold1 4692 + 12 1 CG CGT
scaffold1 4693 - 10 1 CG CGG
scaffold1 4695 - 0 9 CHH CAC
scaffold1 4698 - 0 9 CHH CTA
scaffold1 4699 + 0 14 CHG CTG
scaffold1 4701 - 1 8 CHG CAG
scaffold1 4702 + 0 13 CHH CTC
scaffold1 4704 + 0 13 CHH CCC
scaffold1 4705 + 0 13 CHG CCG
scaffold1 4706 + 13 0 CG CGC
scaffold1 4707 - 9 0 CG CGG
scaffold1 4708 + 0 13 CHH CAA
scaffold1 4711 - 0 9 CHH CTT
scaffold1 4713 + 1 12 CHG CAG
scaffold1 4715 - 1 8 CHG CTG
scaffold1 4716 - 1 8 CHH CCT
scaffold1 4719 + 12 1 CG CGA
scaffold1 4720 - 5 1 CG CGT
scaffold1 4722 - 6 0 CHH CTC
scaffold1 4723 - 1 5 CHH CCT
scaffold1 4725 + 0 10 CHH CCT
scaffold1 4726 + 0 11 CHH CTT
scaffold1 4729 - 1 6 CHH CAA
scaffold1 4731 + 0 11 CHH CCA
scaffold1 4732 + 1 10 CHH CAC
scaffold1 4734 + 8 3 CG CGT
scaffold1 4735 - 7 0 CG CGT
scaffold1 4738 + 0 12 CHH CCT
scaffold1 4739 + 0 12 CHG CTG
scaffold1 4741 - 0 7 CHG CAG
scaffold1 4743 + 0 12 CHH CTT
scaffold1 4746 - 0 7 CHH CAA
scaffold1 4748 - 0 7 CHH CAC
scaffold1 4750 - 0 7 CHH CTC
scaffold1 4751 + 0 11 CHG CTG
scaffold1 4753 - 0 7 CHG CAG
scaffold1 4754 - 0 7 CHH CCA
scaffold1 4755 + 1 10 CHG CTG
scaffold1 4757 - 0 7 CHG CAG
scaffold1 4758 + 8 3 CG CGG
scaffold1 4759 - 5 1 CG CGC
scaffold1 4760 - 1 6 CHG CCG
scaffold1 4761 - 0 7 CHH CCC
scaffold1 4762 + 0 11 CHH CCA
scaffold1 4763 + 0 11 CHH CAC
scaffold1 4765 + 0 10 CHH CAA
scaffold1 4769 - 0 5 CHH CTT
scaffold1 4772 + 0 9 CHH CCA
scaffold1 4773 + 0 9 CHG CAG
scaffold1 4775 - 0 5 CHG CTG
scaffold1 4776 + 0 9 CHH CTC
scaffold1 4778 + 8 2 CG CGC
scaffold1 4779 - 4 0 CG CGA
scaffold1 4780 + 9 2 CG CGG
scaffold1 4781 - 4 0 CG CGC
scaffold1 4782 - 0 4 CHG CCG
scaffold1 4783 - 0 4 CHH CCC
scaffold1 4784 + 0 12 CHG CCG
scaffold1 4785 + 9 3 CG CGC
scaffold1 4786 - 4 0 CG CGG
scaffold1 4787 + 0 12 CHH CAA
scaffold1 4792 - 0 4 CHH CAA
scaffold1 4793 - 0 4 CHH CCA
scaffold1 4795 + 0 13 CHG CCG
scaffold1 4796 + 12 1 CG CGC
scaffold1 4797 - 3 1 CG CGG
scaffold1 4798 + 9 3 CG CGG
scaffold1 4799 - 4 0 CG CGC
scaffold1 4800 - 0 5 CHG CCG
scaffold1 4801 - 0 5 CHH CCC
scaffold1 4802 - 0 5 CHH CCCThis is my R-script:
library(bsseq)
list.files(pattern="*.txt") -> report.files
bsseq.data <-read.bismark(files=report.files,sampleNames=gsub(".txt","",report.files),rmZeroCov=TRUE,mc.cores=2, strandCollapse=FALSE,fileType="cytosineReport")
bsseq.data[[1]] <- c("low","low","low","low","high","high","high","high")
bsseq.data[[2]] <- c("pair1","pair2","pair3","pair4","pair1","pair2","pair3","pair4")
pData(bsseq.data) <- setNames(pData(bsseq.data),c("Type","pair"))
bsseq.data.smoothed <- BSmooth(bsseq.data, mc.cores=2, verbose=TRUE)
bsseq.data.smooth <- updateObject(bsseq.data.smoothed)
myBS.cov <- getCoverage(bsseq.data.smooth)
myLoci1<- which(rowSums(myBS.cov[,bsseq.data$Type == "high"] >= 2) >= 2 &rowSums(myBS.cov[, bsseq.data$Type == "low"] >= 2) >= 2)
bsseq.data.smooth1 <- bsseq.data.smooth[myLoci1,]
BSmooth.tstat(bsseq.data.smooth1,group1=c("LLiver_cytosine_report", "LZH369L_cytosine_report","LZH371L_cytosine_report","LZH373L_cytosine_report"),group2=c("MLS387L_cytosine_report", "MLS388L_cytosine_report","MLS390L_cytosine_report","MLS3L_cytosine_report"),estimate.var="group2",local.correct=TRUE, verbose=TRUE) -> bsseq.data.tstats1
#tcrit1 <- -qt(0.01/2, 10)
dmrs0 <- dmrFinder(bsseq.data.tstats1, cutoff = c(-4.6, 4.6),stat="tstat.corrected",verbose=TRUE)
dmrs <- subset(dmrs0, n >= 3 & abs(meanDiff) >= 0.1)
write.table(dmrs,file=Liver_DMR.txt,sep='\t',quote=FALSE)Thanks for sharing. To confirm, can this error can be triggered with the first 2000 lines of the report that you shared?
PS. The rendering/formatting is Markdown which supported by lots of sites and frameworks - a very neat format. Some are even moving from LaTeX to Markdown for writing full scientific articles. In your case, you need to "fence" your code block with ``` on the lines before and after the code - if you're into LaTeX that corresponds to using \begin{verbatim} and \end{verbatim}. I've done that for your comments.
zyworship
commented
6 years ago @PeteHaitch Thank you so much, I don't be aware of this question. I try use Markdown to convert the frameworks.
PeteHaitch
commented
6 years ago @zyworship Are you able to trigger this error with the first 2000 lines of the report that you shared? Or only with the full files?
zyworship
commented
6 years ago maybe it can't trigger this error, only the full could trigger this.
发自网易邮箱大师 On 4/11/2018 23:05，Peter Hickeynotifications@github.com wrote：
@zyworship Are you able to trigger this error with the first 2000 lines of the report that you shared? Or only with the full files?
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub, or mute the thread.
PeteHaitch
commented
6 years ago Ok. I'll take a look with the example dataset, but without a reproducible example it's hard for me to know what might be the problem. Can you gzip one of the files and put it on Dropbox (or somewhere else)? It should be much smaller than 20 GB after gzipping it
PeteHaitch
commented
6 years ago To update: I'm unable to reproduce this with the example data. It's difficult for me to offer any more advice without a reproducible example.
zyworship
commented
6 years ago @PeteHaitch Thank you so much, I will try it again.