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hansenlab / bsseq

Devel repository for bsseq
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getMeth relation to CpGs #96

Open ravitharakan opened 4 years ago

ravitharakan commented 4 years ago

I am using getMeth to pull the M matrix directly, but I only get a matrix with no labels for the rows. How do I figure out which CpGs are which rows? Are they in order?

kasperdanielhansen commented 4 years ago

The M matrix is the same order as the embedded GRanges which you can get with rowRanges(OBJECT)

On Mon, Aug 3, 2020 at 5:03 AM ravitharakan notifications@github.com wrote:

I am using getMeth to pull the M matrix directly, but I only get a matrix with no labels for the rows. How do I figure out which CpGs are which rows? Are they in order?

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