We're using BiocParallel::bplapply() in many places but all with BPPARAM = SerialParam() hardcoded. Need to investigate which functions can safely have BPPARAM be specified by the user.
In particular:
It's unclear if any functions that realize DelayedArray instances can be safely run in parallel
read.meth*() functions should be able to make good use of parallelisation
We're using
BiocParallel::bplapply()in many places but all withBPPARAM = SerialParam()hardcoded. Need to investigate which functions can safely haveBPPARAMbe specified by the user.In particular:
read.meth*()functions should be able to make good use of parallelisation