Functions that still need support for DelayedArray-backed minfi objects - Githubissues

hansenlab / minfi

Devel repository for minfi

60 stars 70 forks source link

Functions that still need support for DelayedArray-backed minfi objects #148

Open PeteHaitch opened 6 years ago

PeteHaitch commented 6 years ago

[x] All combineArrays() methods (https://github.com/hansenlab/minfi/pull/156)
[x] All convertArray() methods (https://github.com/hansenlab/minfi/pull/155)
[x] mdsPlot() (f742e9100f63a3f984ce683f93a1fcc72d64edd6)
[x] cpgCollapse() (https://github.com/hansenlab/minfi/pull/159)
[ ] blockFinder() (https://github.com/hansenlab/minfi/pull/160, #168)
[ ] bumphunter,GenomicRatioSet-method
[ ] compartments() (https://github.com/hansenlab/minfi/pull/161)
[ ] createCorMatrix() (https://github.com/hansenlab/minfi/pull/161)
[ ] dmpFinder()
[ ] gaphunter()
[ ] estimateCellCounts()
[ ] pickCompProbes()
[ ] preprocessFunnorm()
[ ] preprocessQuantile()

Additionally, need to work on API for

[ ] read.meth*()