search

hansenlab / minfi

Devel repository for minfi
58 stars 67 forks source link

Error FlowSortedBloodEPIC on a cluster #191

Open EPICuser1 opened 4 years ago

EPICuser1 commented 4 years ago

I have installed FlowSortedBloodEPIC and followed the user guide.

Here is the code, pretty straight forward: https://imgur.com/ToEXcA4

However, I get this error here: https://imgur.com/g2DEwXs

I am running minfi + FlowSortedBloodEPIC offline on a cluster. What is wrong?

wudustan commented 4 years ago

The function name 'estimateCellCounts2' suggests to me that someone else has taken the original function 'estimateCellCounts' and wrapped it in some other code. minfi itself doesn't export a function of that name with the '2' at the end. The arguments you are supplying the function don't all seem to be the arguments the minfi base function would expect.

From that it's hard to tell what is actually going wrong since the code is unlikely to be coming from the minfi guys. Are you able to get in touch with whoever has written the function? If not consider posting to somewhere like Stackoverflow ** provided the function is not part of some IP or is protected / confidential to your workplace since we'll probably need to see the full code to figure out what is going wrong.