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hansenlab / minfi

Devel repository for minfi
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hg38 #232

Open etiennedanis opened 2 years ago

etiennedanis commented 2 years ago

Hello, Thank you for creating minfi! It is super useful!

Is there an hg38 version of an Illumina Human Methylation Array 450K annotation package? Like this one: IlluminaHumanMethylation450kanno.ilmn12.hg19 but for hg38? If not, how could I create one? Thank you very much in advance.

Best,

Etienne

ehugos commented 9 months ago

Commenting to see if any user have found a solution to this. To my knowledge, there are still no annotation packages for hg38 coordinates for EPICv1 arrays either. This is quite limiting, seeing how minfi to my knowledge does not allow for custom array-based annotations.

VonBrox commented 1 month ago

Also wondering about this

mwsill commented 1 month ago

https://zwdzwd.github.io/InfiniumAnnotation

VonBrox commented 1 month ago

https://zwdzwd.github.io/InfiniumAnnotation

Thanks, I have used this one as well (hg38 gene annotation GENCODE36 for HM450K), but unlike the hg19 annotation it does not annotate regulatory feature group: "promoter", "gene body," etc.