hansenlab / minfi

Devel repository for minfi
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Error I preprocess quantile #250

Open simonjuleseric2 opened 1 year ago

simonjuleseric2 commented 1 year ago

Using this workflow: https://nbis-workshop-epigenomics.readthedocs.io/en/latest/content/tutorials/methylationArray/Array_Tutorial.html#load-datasets for testing I get the following error at the normalization step using preprocessQuantile:

Error in normalize.quantiles(mat[Index2, ]): ERROR; return code from pthread_create() is 22

Traceback:

  1. preprocessQuantile(rgSet)
  2. .qnormStratified(mat = U, auIndex = auIndex, xIndex = xIndex, . yIndex = yIndex, sex = sex, probeType = probeType, regionType = regionType)
  3. .qnormStratifiedHelper(mat = mat[auIndex, ], probeType = probeType[auIndex], . regionType = regionType[auIndex])
  4. normalize.quantiles(mat[Index2, ])

I also get the same error with my own data