kasperdanielhansen
commented
7 years ago This is because you also have bsseq loaded. Both bsseq and minfi have a getMeth() function, but they are different. You can always specify by minfi::getMeth() and bsseq::getMeth().
But I should really think about fixing this, since I have written both of the packages and it is not unreasonable to have them both loaded at the same time.
Best, Kasper
On Wed, Jan 25, 2017 at 8:38 AM, NizarTouleimat notifications@github.com wrote:
Dear Kasper,
I am working on methylation EPIC array data. I was using the functions getMeth and getUnmeth to respectively extract 'methylated' and 'unmethylated' signals from a MethylSet object. However, I think that until the laste release of minfi, when I use this function getMeth(MethylSet) I get this error message : Error: is(BSseq, "BSseq") is not TRUE
This error does'nt appear when using getUnmeth(MethylSet).
Is there any conflict between functions ? Should I use another function ?
Many thanks for your help !
Best regards,
Nizar Touleimat
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NizarTouleimat
Dear Kasper,
I am working on methylation EPIC array data. I was using the functions getMeth and getUnmeth to respectively extract 'methylated' and 'unmethylated' signals from a MethylSet object. However, I think that until the laste release of minfi, when I use this function getMeth(MethylSet) I get this error message : Error: is(BSseq, "BSseq") is not TRUE
This error does'nt appear when using getUnmeth(MethylSet).
Is there any conflict between functions ? Should I use another function ?
Many thanks for your help !
Best regards,
Nizar Touleimat