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hansenlab / tricycle

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Projection on UMAP #5

Closed s849 closed 2 years ago

s849 commented 2 years ago

Hello,

Thank you for developing such an amazing tool. I am wondering if you can provide a better example on how to project the results on an existing UMAP? I am having trouble performing this step.

Thank you!

sjczheng commented 2 years ago

Hello,

If you operate on SingleCellExperiment object (sce.o), say you have a reduceDim named as "UMAP". You can visualize the results by 

plot_emb_circle_scale(sce.o, dimred = "UMAP")

Best, Shijie