How to make the evaluation to work on multiple cores

haotianteng / Chiron

A basecaller for Oxford Nanopore Technologies' sequencers

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How to make the evaluation to work on multiple cores #105

Closed drdivine closed 4 years ago

drdivine commented 4 years ago

Describe the requested feature It would be great if I have multiple GPUs that the evaluation i.e. chiron call would work on mulitple GPUs. Any advice for making this work? Additional context Add any other context about the problem here.

haotianteng commented 4 years ago

Currently, multi GPU support is not implemented, but you can split the reads and call Chiron multiple times, in each call, use the following command to choose the GPU, for example, choose the first GPU: export CUDA_VISIBLE_DEVICES=0 and then run chiron using chiron call