search

haotianteng / Chiron

A basecaller for Oxford Nanopore Technologies' sequencers
Other
122 stars 53 forks source link

Cannot restore default model #46

Closed nmiculinic closed 6 years ago

nmiculinic commented 6 years ago

commit: 0dbd1c6bafac13668acc9e0ec712436acccfda00 ((current master as of now))

2018-04-28 15:55:11.432647: W tensorflow/core/framework/op_kernel.cc:1318] OP_REQUIRES failed at save_restore_v2_ops.cc:184 : Not found: Key res_layer4/branch1/conv1/weights not found in checkpoint

My guess...somebody changed the default settings and things break.

python chiron/entry.py call -e fasta --beam 0 --batch_size 25 -i chiron/example_data/ -o /tmp/cch4
haotianteng commented 6 years ago

Hi Neven, That's me testing the RNA model, you can roll back by uncommenting the DNA_default block and comment the RNA model block in cnn.py to make DNA basecalling work again.

Teng

2018-04-28 23:56 GMT+10:00 Neven Miculinic notifications@github.com:

commit: 0dbd1c6 https://github.com/haotianteng/Chiron/commit/0dbd1c6bafac13668acc9e0ec712436acccfda00 ((current master as of now))

2018-04-28 15:55:11.432647: W tensorflow/core/framework/op_kernel.cc:1318] OP_REQUIRES failed at save_restore_v2_ops.cc:184 : Not found: Key res_layer4/branch1/conv1/weights not found in checkpoint

My guess...somebody changed the default settings and not things break.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/haotianteng/Chiron/issues/46, or mute the thread https://github.com/notifications/unsubscribe-auth/AKo3X1vEDvkzI8vsY-gR2ZLaBgQ65lC4ks5ttHT-gaJpZM4Tra6W .

-- Teng Haotian University of Queensland, Queensland, Australia +61 0426116017

haotianteng commented 6 years ago

DNA model has been rolled back.