Describe the bug
A clear and concise description of what the bug is.
To Reproduce
Steps to reproduce the behavior:
Source code / logs
Include any logs or source code that would be helpful to diagnose the problem. If including tracebacks, please include the full traceback. Large logs and files should be attached. Try to provide a reproducible test case that is the bare minimum necessary to generate the problem.
Screenshots
If applicable, add screenshots to help explain your problem.
Environment (please complete the following information):
OS: [Ubuntu 18.04]
GPU [GTX 1080]
Chiron Version [0.4.2]
Tensorflow Version [1.8.0-gpu]
Python Version [2.7]
Other related packages version
Additional context
Add any other context about the problem here.
['call', '-i', 'chiron/example_data/DNA/', '-o', 'exp', '-m', '/home/tiger/codes/Chiron/chiron/model/DNA_default']
('model_default_path', '/home/tiger/codes/Chiron/chiron/model/DNA_default')
Subdirectory processing:: 0it [00:00, ?it/s] INFO:root:chiron/example_data/DNA/read5.fast5 has no reference. | 0/5 [00:00<?, ?it/s]
Traceback (most recent call last):
File "chiron/entry.py", line 99, in
main()
File "chiron/entry.py", line 91, in main
args.func(args)
File "chiron/entry.py", line 24, in evaluation
extract(FLAGS)
File "/home/tiger/codes/Chiron/chiron/utils/extract_sig_ref.py", line 77, in extract
if (FLAGS.test_number is not None) and (count >=FLAGS.test_number):
AttributeError: 'Namespace' object has no attribute 'test_number'
haotianteng
commented
5 years ago
Describe the bug A clear and concise description of what the bug is.
To Reproduce Steps to reproduce the behavior: Source code / logs Include any logs or source code that would be helpful to diagnose the problem. If including tracebacks, please include the full traceback. Large logs and files should be attached. Try to provide a reproducible test case that is the bare minimum necessary to generate the problem.
Screenshots If applicable, add screenshots to help explain your problem.
Environment (please complete the following information):
Additional context Add any other context about the problem here.
['call', '-i', 'chiron/example_data/DNA/', '-o', 'exp', '-m', '/home/tiger/codes/Chiron/chiron/model/DNA_default'] ('model_default_path', '/home/tiger/codes/Chiron/chiron/model/DNA_default') Subdirectory processing:: 0it [00:00, ?it/s] INFO:root:chiron/example_data/DNA/read5.fast5 has no reference. | 0/5 [00:00<?, ?it/s]
Traceback (most recent call last): File "chiron/entry.py", line 99, in
main()
File "chiron/entry.py", line 91, in main
args.func(args)
File "chiron/entry.py", line 24, in evaluation
extract(FLAGS)
File "/home/tiger/codes/Chiron/chiron/utils/extract_sig_ref.py", line 77, in extract
if (FLAGS.test_number is not None) and (count >=FLAGS.test_number):
AttributeError: 'Namespace' object has no attribute 'test_number'