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haotianteng / Chiron

A basecaller for Oxford Nanopore Technologies' sequencers
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OP_REQUIRES failed at save_restore_v2_ops.cc:184 #80

Closed hlitz closed 5 years ago

hlitz commented 5 years ago

Describe the bug script fails with: ... INFO:tensorflow:Restoring parameters from chiron/model/DNA_default/model.ckpt-209071 INFO:tensorflow:Restoring parameters from chiron/model/DNA_default/model.ckpt-209071 2019-02-12 20:07:14.446087: W tensorflow/core/framework/op_kernel.cc:1273] OP_REQUIRES failed at save_restore_v2_ops.cc:184 : Not found: Key res_layer1/branch1/conv1_bn/offset not \ found in checkpoint

To Reproduce python chiron/entry.py call -i chiron/example_data/DNA/ -m chiron/model/DNA_default/ -o out/

Environment (please complete the following information): Ubuntu 2xGTX2080ti chiron: master branch: f21d7bea5d0c1c8ac071181bd777301df69e8b7d conda with recent packages

Additional context Add any other context about the problem here.

haotianteng commented 5 years ago

Please use the Chiron release version. As I am testing different batch normalization option. Use Chiron-v0.4, which has exactly the same DNA model as the current branch.

hlitz commented 5 years ago

Could you create a branch for each release version you put out? I need source code access and it would be great to always have a stable branch to work with. What branch/commit would you suggest I should work with?

haotianteng commented 5 years ago

Check it out: https://github.com/haotianteng/Chiron/releases