Coordinate system of the output fragment file?

haowenz / chromap

Fast alignment and preprocessing of chromatin profiles

https://haowenz.github.io/chromap/

MIT License

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Closed JiaxinLi-lipluszn closed 8 months ago

JiaxinLi-lipluszn commented 8 months ago

Is the output fragment .tsv file under 1-based, fully closed indices, or 0-based, half closed indices?

Thanks a lot for your help!

mourisl commented 8 months ago

It's in bed format, so 0-based half closed.