Gene set enrichment analysis

haowulab / DSS

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Gene set enrichment analysis #25

Open malonzm1 opened 1 year ago

malonzm1 commented 1 year ago

Hi!

In performing gene set enrichment analysis on DSS output, how do I generate a background set? I tried setting the p.threshold in callDMR to 1.0 but I'm not sure if this is the right approach.

Thanks and good day.

haowulab commented 1 year ago

DSS doesn't provide such functionality. Can't you just use a random set of genes as background?