Open isaactpetersen opened 3 years ago
@isaactpetersen the rmarkdown document you were working on was a html document. Using the code you provided, it seems that it's working on my machine.
I have the same issue reported by @isaactpetersen and can confirm the same behavior on my machine. Inline equations are not displayed when previewing the html_notebook, using RStudio "Preview" button, but are displayed when rmarkdown::render()
is used.
The output is also rendered correctly when the document is knitted to pdf or html. Moreover, the issue persists if we change
kable(head(mtcars)) %>%
kable_styling(latex_options = c("scale_down"))
with
kbl(head(mtcars))
My session info is:
R version 4.0.4 (2021-02-15)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19042)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] kableExtra_1.3.4 pacman_0.5.1
loaded via a namespace (and not attached):
[1] rstudioapi_0.13 knitr_1.31 xml2_1.3.2 magrittr_2.0.1 rvest_1.0.0
[6] munsell_0.5.0 colorspace_2.0-0 viridisLite_0.3.0 R6_2.5.0 rlang_0.4.10
[11] highr_0.8 stringr_1.4.0 httr_1.4.2 tools_4.0.4 webshot_0.5.2
[16] xfun_0.22 jquerylib_0.1.3 htmltools_0.5.1.1 systemfonts_1.0.1 yaml_2.2.1
[21] digest_0.6.27 lifecycle_1.0.0 sass_0.3.1 rsconnect_0.8.16 glue_1.4.2
[26] evaluate_0.14 rmarkdown_2.7 stringi_1.5.3 bslib_0.2.4 compiler_4.0.4
[31] scales_1.1.1 jsonlite_1.7.2 svglite_2.0.0
and my Rstudio version is:
$citation
To cite RStudio in publications use:
RStudio Team (2021). RStudio: Integrated Development Environment for R. RStudio, PBC, Boston, MA
URL http://www.rstudio.com/.
A BibTeX entry for LaTeX users is
@Manual{,
title = {RStudio: Integrated Development Environment for R},
author = {{RStudio Team}},
organization = {RStudio, PBC},
address = {Boston, MA},
year = {2021},
url = {http://www.rstudio.com/},
}
$mode
[1] "desktop"
$version
[1] ‘1.4.1106’
$release_name
[1] "Tiger Daylily"
I see. It was because I defined a customed mathjax syntax here https://github.com/haozhu233/kableExtra/blob/a6af5c067c2b4ca8317736f4a3e6c0f7db508fef/R/print.R#L14. It seems that preview treats the output as a regular rstudio browser so that's why it's not working.
Describe the bug When I specify
latex_options
from thekableExtra
package in my R Markdown notebook, my inline latex code does not show after I run all code chunks. I've tried viewing it in Rstudio Preview or viewing the html in Google Chrome, but neither works (I'm not talking about viewing it in Rstudio's editor). When I remove thelatex_options
line, my inline latex code shows correctly. When I render usingrmarkdown::render()
(instead of running all code chunks in Rstudio), my inline latex code shows correctly. How can I get my inline latex code to show when using specifyinglatex_options
from thekableExtra
package?To Reproduce Here's a reproducible example where the inline latex code does not show correctly—make sure to run all code chunks before previewing:
Table with latex options from kableExtra package:
This works:
$$ x=\frac{1}{2} $$
This does not work:
$x=\frac{1}{2}$
title: "R Notebook" output: html_notebook
Table with latex options from kableExtra package:
This works:
$$ x=\frac{1}{2} $$
This also works:
$x=\frac{1}{2}$
Matrix products: default
locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C LC_TIME=English_United States.1252
attached base packages: [1] stats graphics grDevices utils datasets methods base
other attached packages: [1] kableExtra_1.3.1
loaded via a namespace (and not attached): [1] rstudioapi_0.13 knitr_1.30 xml2_1.3.2 magrittr_2.0.1 rvest_0.3.6 munsell_0.5.0 colorspace_2.0-0 [8] viridisLite_0.3.0 R6_2.5.0 rlang_0.4.9 stringr_1.4.0 httr_1.4.2 highr_0.8 tools_4.0.2
[15] webshot_0.5.2 packrat_0.5.0 xfun_0.19 htmltools_0.5.0 fortunes_1.5-4 yaml_2.2.1 digest_0.6.27
[22] lifecycle_0.2.0 glue_1.4.2 evaluate_0.14 rmarkdown_2.6 stringi_1.5.3 compiler_4.0.2 scales_1.1.1
[29] jsonlite_1.7.2
To cite RStudio in publications use:
RStudio Team (2020). RStudio: Integrated Development Environment for R. RStudio, PBC, Boston, MA URL http://www.rstudio.com/.
A BibTeX entry for LaTeX users is
@Manual{, title = {RStudio: Integrated Development Environment for R}, author = {{RStudio Team}}, organization = {RStudio, PBC}, address = {Boston, MA}, year = {2020}, url = {http://www.rstudio.com/}, }
$mode [1] "desktop"
$version [1] ‘1.3.1056’
$release_name [1] "Water Lily"