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hapifhir / hapi-fhir-jpaserver-starter

Apache License 2.0
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Problem with flyway after upgarding to 5.6.0 #292

Closed ZuSe closed 2 years ago

ZuSe commented 2 years ago

There seems to be a problem after upgrading to 5.6.0 from 5.5.3 with an existent database @jkiddo @tadgh Should that have been fixed by your MR from yesterday or is it tbd?

I am running it with Java 11 on Ubuntu 20.04, PSQL 13.4

This is my local config regarding the db:


spring:
  datasource:
    url: 'jdbc:postgresql://localhost:5432/iatros_fhir_local'
    username: postgres
    password: postgres
    driverClassName: org.postgresql.Driver
    max-active: 20

    # database connection pool size
    hikari:
      maximum-pool-size: 10
  flyway:
    check-location: false
  jpa:
    properties:
      hibernate.format_sql: false
      hibernate.show_sql: false
      #      hibernate.dialect: org.hibernate.dialect.h2dialect
      #      hibernate.hbm2ddl.auto: update
      #      hibernate.jdbc.batch_size: 20
      #      hibernate.cache.use_query_cache: false
      #      hibernate.cache.use_second_level_cache: false
      #      hibernate.cache.use_structured_entries: false
      #      hibernate.cache.use_minimal_puts: false
      ###    These settings will enable fulltext search with lucene
      hibernate.search.enabled: true
      hibernate.search.backend.type: lucene
      hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiLuceneAnalysisConfigurer
      hibernate.search.backend.directory.type: local-filesystem
      hibernate.search.backend.directory.root: target/lucenefiles
      hibernate.search.backend.lucene_version: lucene_current
  batch:
    job:
      enabled: false
.QuartzScheduler' - running locally.
  NOT STARTED.
  Currently in standby mode.
  Number of jobs executed: 0
  Using thread pool 'org.quartz.simpl.SimpleThreadPool' - with 4 threads.
  Using job-store 'org.quartz.simpl.RAMJobStore' - which does not support persistence. and is not clustered.

2021-11-19 11:29:57.190 [main] INFO  org.quartz.impl.StdSchedulerFactory [StdSchedulerFactory.java:1374] Quartz scheduler 'hapi-fhir-jpa-scheduler' initialized from an externally provided properties instance.
2021-11-19 11:29:57.190 [main] INFO  org.quartz.impl.StdSchedulerFactory [StdSchedulerFactory.java:1378] Quartz scheduler version: 2.3.2
2021-11-19 11:29:57.190 [main] INFO  org.quartz.core.QuartzScheduler [QuartzScheduler.java:2293] JobFactory set to: ca.uhn.fhir.jpa.sched.AutowiringSpringBeanJobFactory@46963479
2021-11-19 11:29:57.191 [main] INFO  org.quartz.core.QuartzScheduler [QuartzScheduler.java:585] Scheduler hapi-fhir-jpa-scheduler_$_NON_CLUSTERED paused.
2021-11-19 11:29:57.191 [main] INFO  c.u.f.j.s.BaseSchedulerServiceImpl [BaseSchedulerServiceImpl.java:119] Creating Clustered Scheduler
2021-11-19 11:29:57.192 [main] INFO  org.quartz.impl.StdSchedulerFactory [StdSchedulerFactory.java:1220] Using default implementation for ThreadExecutor
2021-11-19 11:29:57.198 [main] INFO  o.quartz.core.SchedulerSignalerImpl [SchedulerSignalerImpl.java:61] Initialized Scheduler Signaller of type: class org.quartz.core.SchedulerSignalerImpl
2021-11-19 11:29:57.198 [main] INFO  org.quartz.core.QuartzScheduler [QuartzScheduler.java:229] Quartz Scheduler v.2.3.2 created.
2021-11-19 11:29:57.198 [main] INFO  org.quartz.simpl.RAMJobStore [RAMJobStore.java:155] RAMJobStore initialized.
2021-11-19 11:29:57.199 [main] INFO  org.quartz.core.QuartzScheduler [QuartzScheduler.java:294] Scheduler meta-data: Quartz Scheduler (v2.3.2) 'hapi-fhir-jpa-scheduler' with instanceId 'NON_CLUSTERED'
  Scheduler class: 'org.quartz.core.QuartzScheduler' - running locally.
  NOT STARTED.
  Currently in standby mode.
  Number of jobs executed: 0
  Using thread pool 'org.quartz.simpl.SimpleThreadPool' - with 4 threads.
  Using job-store 'org.quartz.simpl.RAMJobStore' - which does not support persistence. and is not clustered.

2021-11-19 11:29:57.199 [main] INFO  org.quartz.impl.StdSchedulerFactory [StdSchedulerFactory.java:1374] Quartz scheduler 'hapi-fhir-jpa-scheduler' initialized from an externally provided properties instance.
2021-11-19 11:29:57.199 [main] INFO  org.quartz.impl.StdSchedulerFactory [StdSchedulerFactory.java:1378] Quartz scheduler version: 2.3.2
2021-11-19 11:29:57.199 [main] INFO  org.quartz.core.QuartzScheduler [QuartzScheduler.java:2293] JobFactory set to: ca.uhn.fhir.jpa.sched.AutowiringSpringBeanJobFactory@46963479
2021-11-19 11:29:57.200 [main] INFO  org.quartz.core.QuartzScheduler [QuartzScheduler.java:585] Scheduler hapi-fhir-jpa-scheduler_$_NON_CLUSTERED paused.
2021-11-19 11:29:57.322 [main] INFO  o.f.c.i.license.VersionPrinter [Slf4jLog.java:49] Flyway Community Edition 6.5.4 by Redgate
2021-11-19 11:29:57.326 [main] WARN  o.f.c.i.s.classpath.ClassPathScanner [Slf4jLog.java:53] Unable to resolve location classpath:db/migration. Note this warning will become an error in Flyway 7.
2021-11-19 11:29:57.328 [main] INFO  com.zaxxer.hikari.HikariDataSource [HikariDataSource.java:95] HikariPool-1 - Starting...
2021-11-19 11:29:57.594 [main] INFO  com.zaxxer.hikari.HikariDataSource [HikariDataSource.java:107] HikariPool-1 - Start completed.
2021-11-19 11:29:57.627 [main] INFO  o.f.c.i.database.DatabaseFactory [Slf4jLog.java:49] Database: jdbc:postgresql://localhost:5432/iatros_fhir_local (PostgreSQL 13.4)
2021-11-19 11:29:57.638 [main] WARN  o.f.c.i.database.base.Database [Slf4jLog.java:53] Flyway upgrade recommended: PostgreSQL 13.4 is newer than this version of Flyway and support has not been tested. The latest supported version of PostgreSQL is 12.
2021-11-19 11:29:57.663 [main] INFO  o.f.core.internal.command.DbValidate [Slf4jLog.java:49] Successfully validated 0 migrations (execution time 00:00.010s)
2021-11-19 11:29:57.664 [main] WARN  o.f.core.internal.command.DbValidate [Slf4jLog.java:53] No migrations found. Are your locations set up correctly?
2021-11-19 11:29:57.685 [main] ERROR o.s.b.w.e.tomcat.TomcatStarter [TomcatStarter.java:61] Error starting Tomcat context. Exception: org.springframework.beans.factory.BeanCreationException. Message: Error creating bean with name 'hapiServletRegistration' defined in ca.uhn.fhir.jpa.starter.Application: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.boot.web.servlet.ServletRegistrationBean]: Factory method 'hapiServletRegistration' threw exception; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'ca.uhn.fhir.jpa.starter.JpaRestfulServer': Unsatisfied dependency expressed through field 'searchParamRegistry'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'searchParamRegistry': Invocation of init method failed; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'registeredResourceChangeListener': Unsatisfied dependency expressed through field 'myResourceChangeListenerCacheRefresher'; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'resourceChangeListenerCacheRefresher': Unsatisfied dependency expressed through field 'myResourceVersionSvc'; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'resourceVersionSvc': Unsatisfied dependency expressed through field 'myResourceTableDao'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'IResourceTableDao' defined in ca.uhn.fhir.jpa.dao.data.IResourceTableDao defined in @EnableJpaRepositories declared on BaseConfig: Cannot create inner bean '(inner bean)#1cc680e' of type [org.springframework.orm.jpa.SharedEntityManagerCreator] while setting bean property 'entityManager'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name '(inner bean)#1cc680e': Cannot resolve reference to bean 'entityManagerFactory' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'flywayInitializer' defined in class path resource [org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration$FlywayConfiguration.class]: Invocation of init method failed; nested exception is java.lang.reflect.InvocationTargetException
2021-11-19 11:29:57.726 [main] INFO  o.a.catalina.core.StandardService [DirectJDKLog.java:173] Stopping service [Tomcat]
2021-11-19 11:29:57.731 [main] WARN  o.a.c.loader.WebappClassLoaderBase [DirectJDKLog.java:173] The web application [ROOT] appears to have started a thread named [hapi-fhir-jpa-scheduler-local-1] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
 java.base@17/java.lang.Object.wait(Native Method)
 org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:568)
2021-11-19 11:29:57.731 [main] WARN  o.a.c.loader.WebappClassLoaderBase [DirectJDKLog.java:173] The web application [ROOT] appears to have started a thread named [hapi-fhir-jpa-scheduler-local-2] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
 java.base@17/java.lang.Object.wait(Native Method)
 org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:568)
2021-11-19 11:29:57.732 [main] WARN  o.a.c.loader.WebappClassLoaderBase [DirectJDKLog.java:173] The web application [ROOT] appears to have started a thread named [hapi-fhir-jpa-scheduler-local-3] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
 java.base@17/java.lang.Object.wait(Native Method)
 org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:568)
2021-11-19 11:29:57.733 [main] WARN  o.a.c.loader.WebappClassLoaderBase [DirectJDKLog.java:173] The web application [ROOT] appears to have started a thread named [hapi-fhir-jpa-scheduler-local-4] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
 java.base@17/java.lang.Object.wait(Native Method)
 org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:568)
2021-11-19 11:29:57.734 [main] WARN  o.a.c.loader.WebappClassLoaderBase [DirectJDKLog.java:173] The web application [ROOT] appears to have started a thread named [hapi-fhir-jpa-scheduler-clustered-1] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
 java.base@17/java.lang.Object.wait(Native Method)
 org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:568)
2021-11-19 11:29:57.734 [main] WARN  o.a.c.loader.WebappClassLoaderBase [DirectJDKLog.java:173] The web application [ROOT] appears to have started a thread named [hapi-fhir-jpa-scheduler-clustered-2] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
 java.base@17/java.lang.Object.wait(Native Method)
 org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:568)
2021-11-19 11:29:57.735 [main] WARN  o.a.c.loader.WebappClassLoaderBase [DirectJDKLog.java:173] The web application [ROOT] appears to have started a thread named [hapi-fhir-jpa-scheduler-clustered-3] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
 java.base@17/java.lang.Object.wait(Native Method)
 org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:568)
2021-11-19 11:29:57.736 [main] WARN  o.a.c.loader.WebappClassLoaderBase [DirectJDKLog.java:173] The web application [ROOT] appears to have started a thread named [hapi-fhir-jpa-scheduler-clustered-4] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
 java.base@17/java.lang.Object.wait(Native Method)
 org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:568)
2021-11-19 11:29:57.736 [main] WARN  o.a.c.loader.WebappClassLoaderBase [DirectJDKLog.java:173] The web application [ROOT] appears to have started a thread named [HikariPool-1 housekeeper] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
 java.base@17/jdk.internal.misc.Unsafe.park(Native Method)
 java.base@17/java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:252)
 java.base@17/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.awaitNanos(AbstractQueuedSynchronizer.java:1672)
 java.base@17/java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take(ScheduledThreadPoolExecutor.java:1182)
 java.base@17/java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take(ScheduledThreadPoolExecutor.java:899)
 java.base@17/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062)
 java.base@17/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122)
 java.base@17/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
 java.base@17/java.lang.Thread.run(Thread.java:833)
2021-11-19 11:29:57.737 [main] WARN  o.a.c.loader.WebappClassLoaderBase [DirectJDKLog.java:173] The web application [ROOT] appears to have started a thread named [HikariPool-1 connection adder] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
 java.base@17/sun.security.util.KeyUtil.getKeySize(KeyUtil.java:151)
 java.base@17/sun.security.util.DisabledAlgorithmConstraints$KeySizeConstraint.permits(DisabledAlgorithmConstraints.java:937)
 java.base@17/sun.security.util.DisabledAlgorithmConstraints$Constraints.permits(DisabledAlgorithmConstraints.java:481)
 java.base@17/sun.security.util.DisabledAlgorithmConstraints.permits(DisabledAlgorithmConstraints.java:169)
 java.base@17/sun.security.ssl.SSLAlgorithmConstraints.permits(SSLAlgorithmConstraints.java:159)
 java.base@17/sun.security.ssl.NamedGroup.isPermitted(NamedGroup.java:413)
 java.base@17/sun.security.ssl.SignatureScheme.isPermitted(SignatureScheme.java:368)
 java.base@17/sun.security.ssl.SignatureScheme.getSupportedAlgorithms(SignatureScheme.java:408)
 java.base@17/sun.security.ssl.SignatureAlgorithmsExtension$CHSignatureSchemesProducer.produce(SignatureAlgorithmsExtension.java:190)
 java.base@17/sun.security.ssl.SSLExtension.produce(SSLExtension.java:599)
 java.base@17/sun.security.ssl.SSLExtensions.produce(SSLExtensions.java:265)
 java.base@17/sun.security.ssl.ClientHello$ClientHelloKickstartProducer.produce(ClientHello.java:649)
 java.base@17/sun.security.ssl.SSLHandshake.kickstart(SSLHandshake.java:529)
 java.base@17/sun.security.ssl.ClientHandshakeContext.kickstart(ClientHandshakeContext.java:107)
 java.base@17/sun.security.ssl.TransportContext.kickstart(TransportContext.java:251)
 java.base@17/sun.security.ssl.SSLSocketImpl.startHandshake(SSLSocketImpl.java:443)
 java.base@17/sun.security.ssl.SSLSocketImpl.startHandshake(SSLSocketImpl.java:421)
 org.postgresql.ssl.MakeSSL.convert(MakeSSL.java:41)
 org.postgresql.core.v3.ConnectionFactoryImpl.enableSSL(ConnectionFactoryImpl.java:534)
 org.postgresql.core.v3.ConnectionFactoryImpl.tryConnect(ConnectionFactoryImpl.java:149)
 org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:213)
 org.postgresql.core.ConnectionFactory.openConnection(ConnectionFactory.java:51)
 org.postgresql.jdbc.PgConnection.<init>(PgConnection.java:223)
 org.postgresql.Driver.makeConnection(Driver.java:465)
 org.postgresql.Driver.connect(Driver.java:264)
 com.zaxxer.hikari.util.DriverDataSource.getConnection(DriverDataSource.java:112)
 com.zaxxer.hikari.util.DriverDataSource.getConnection(DriverDataSource.java:118)
 com.zaxxer.hikari.pool.PoolBase.newConnection(PoolBase.java:341)
 com.zaxxer.hikari.pool.PoolBase.newPoolEntry(PoolBase.java:193)
 com.zaxxer.hikari.pool.HikariPool.createPoolEntry(HikariPool.java:428)
 com.zaxxer.hikari.pool.HikariPool.access$300(HikariPool.java:70)
 com.zaxxer.hikari.pool.HikariPool$PoolEntryCreator.call(HikariPool.java:612)
 com.zaxxer.hikari.pool.HikariPool$PoolEntryCreator.call(HikariPool.java:598)
 java.base@17/java.util.concurrent.FutureTask.run(FutureTask.java:264)
 java.base@17/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
 java.base@17/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
 java.base@17/java.lang.Thread.run(Thread.java:833)
2021-11-19 11:29:57.738 [main] WARN  o.a.c.loader.WebappClassLoaderBase [DirectJDKLog.java:173] The web application [ROOT] appears to have started a thread named [hapi-fhir-jpa-scheduler_QuartzSchedulerThread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
 java.base@17/java.lang.Object.wait(Native Method)
 org.quartz.core.QuartzSchedulerThread.run(QuartzSchedulerThread.java:254)
2021-11-19 11:29:57.739 [main] WARN  o.a.c.loader.WebappClassLoaderBase [DirectJDKLog.java:173] The web application [ROOT] appears to have started a thread named [hapi-fhir-jpa-scheduler_QuartzSchedulerThread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
 java.base@17/java.lang.Object.wait(Native Method)
 org.quartz.core.QuartzSchedulerThread.run(QuartzSchedulerThread.java:254)
2021-11-19 11:29:57.741 [main] WARN  o.s.b.w.s.c.AnnotationConfigServletWebServerApplicationContext [AbstractApplicationContext.java:591] Exception encountered during context initialization - cancelling refresh attempt: org.springframework.context.ApplicationContextException: Unable to start web server; nested exception is org.springframework.boot.web.server.WebServerException: Unable to start embedded Tomcat
2021-11-19 11:29:57.742 [main] INFO  com.zaxxer.hikari.HikariDataSource [HikariDataSource.java:347] HikariPool-1 - Shutdown initiated...
2021-11-19 11:29:57.742 [main] INFO  com.zaxxer.hikari.pool.HikariPool [HikariPool.java:204] HikariPool-1 - Close initiated...
2021-11-19 11:29:57.762 [main] INFO  com.zaxxer.hikari.pool.HikariPool [HikariPool.java:238] HikariPool-1 - Closed.
2021-11-19 11:29:57.763 [main] INFO  com.zaxxer.hikari.HikariDataSource [HikariDataSource.java:349] HikariPool-1 - Shutdown completed.
2021-11-19 11:29:57.778 [main] INFO  o.s.b.a.l.ConditionEvaluationReportLoggingListener [ConditionEvaluationReportLoggingListener.java:136] 

Error starting ApplicationContext. To display the conditions report re-run your application with 'debug' enabled.
2021-11-19 11:29:57.811 [main] ERROR o.s.boot.SpringApplication [SpringApplication.java:843] Application run failed
org.springframework.context.ApplicationContextException: Unable to start web server; nested exception is org.springframework.boot.web.server.WebServerException: Unable to start embedded Tomcat
        at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.onRefresh(ServletWebServerApplicationContext.java:163)
        at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:577)
        at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.refresh(ServletWebServerApplicationContext.java:145)
        at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:754)
        at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:434)
        at org.springframework.boot.SpringApplication.run(SpringApplication.java:338)
        at org.springframework.boot.SpringApplication.run(SpringApplication.java:1343)
        at org.springframework.boot.SpringApplication.run(SpringApplication.java:1332)
        at ca.uhn.fhir.jpa.starter.Application.main(Application.java:32)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
        at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.base/java.lang.reflect.Method.invoke(Method.java:568)
        at org.springframework.boot.loader.MainMethodRunner.run(MainMethodRunner.java:49)
        at org.springframework.boot.loader.Launcher.launch(Launcher.java:108)
        at org.springframework.boot.loader.Launcher.launch(Launcher.java:58)
        at org.springframework.boot.loader.WarLauncher.main(WarLauncher.java:59)
Caused by: org.springframework.boot.web.server.WebServerException: Unable to start embedded Tomcat
        at org.springframework.boot.web.embedded.tomcat.TomcatWebServer.initialize(TomcatWebServer.java:142)
        at org.springframework.boot.web.embedded.tomcat.TomcatWebServer.<init>(TomcatWebServer.java:104)
        at org.springframework.boot.web.embedded.tomcat.TomcatServletWebServerFactory.getTomcatWebServer(TomcatServletWebServerFactory.java:450)
        at org.springframework.boot.web.embedded.tomcat.TomcatServletWebServerFactory.getWebServer(TomcatServletWebServerFactory.java:199)
        at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.createWebServer(ServletWebServerApplicationContext.java:182)
        at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.onRefresh(ServletWebServerApplicationContext.java:160)
        ... 16 common frames omitted
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'hapiServletRegistration' defined in ca.uhn.fhir.jpa.starter.Application: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.boot.web.servlet.ServletRegistrationBean]: Factory method 'hapiServletRegistration' threw exception; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'ca.uhn.fhir.jpa.starter.JpaRestfulServer': Unsatisfied dependency expressed through field 'searchParamRegistry'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'searchParamRegistry': Invocation of init method failed; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'registeredResourceChangeListener': Unsatisfied dependency expressed through field 'myResourceChangeListenerCacheRefresher'; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'resourceChangeListenerCacheRefresher': Unsatisfied dependency expressed through field 'myResourceVersionSvc'; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'resourceVersionSvc': Unsatisfied dependency expressed through field 'myResourceTableDao'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'IResourceTableDao' defined in ca.uhn.fhir.jpa.dao.data.IResourceTableDao defined in @EnableJpaRepositories declared on BaseConfig: Cannot create inner bean '(inner bean)#1cc680e' of type [org.springframework.orm.jpa.SharedEntityManagerCreator] while setting bean property 'entityManager'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name '(inner bean)#1cc680e': Cannot resolve reference to bean 'entityManagerFactory' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'flywayInitializer' defined in class path resource [org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration$FlywayConfiguration.class]: Invocation of init method failed; nested exception is java.lang.reflect.InvocationTargetException
        at org.springframework.beans.factory.support.ConstructorResolver.instantiate(ConstructorResolver.java:658)
        at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:486)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:1334)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1177)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:564)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:524)
        at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:335)
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:333)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:213)
        at org.springframework.boot.web.servlet.ServletContextInitializerBeans.getOrderedBeansOfType(ServletContextInitializerBeans.java:212)
        at org.springframework.boot.web.servlet.ServletContextInitializerBeans.getOrderedBeansOfType(ServletContextInitializerBeans.java:203)
        at org.springframework.boot.web.servlet.ServletContextInitializerBeans.addServletContextInitializerBeans(ServletContextInitializerBeans.java:97)
        at org.springframework.boot.web.servlet.ServletContextInitializerBeans.<init>(ServletContextInitializerBeans.java:86)
        at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.getServletContextInitializerBeans(ServletWebServerApplicationContext.java:260)
        at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.selfInitialize(ServletWebServerApplicationContext.java:234)
        at org.springframework.boot.web.embedded.tomcat.TomcatStarter.onStartup(TomcatStarter.java:53)
        at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5219)
        at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
        at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1396)
        at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1386)
        at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
        at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
        at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:145)
        at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:919)
        at org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:835)
        at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
        at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1396)
        at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1386)
        at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
        at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
        at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:145)
        at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:919)
        at org.apache.catalina.core.StandardEngine.startInternal(StandardEngine.java:263)
        at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
        at org.apache.catalina.core.StandardService.startInternal(StandardService.java:432)
        at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
        at org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:927)
        at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
        at org.apache.catalina.startup.Tomcat.start(Tomcat.java:486)
        at org.springframework.boot.web.embedded.tomcat.TomcatWebServer.initialize(TomcatWebServer.java:123)
        ... 21 common frames omitted
Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.boot.web.servlet.ServletRegistrationBean]: Factory method 'hapiServletRegistration' threw exception; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'ca.uhn.fhir.jpa.starter.JpaRestfulServer': Unsatisfied dependency expressed through field 'searchParamRegistry'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'searchParamRegistry': Invocation of init method failed; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'registeredResourceChangeListener': Unsatisfied dependency expressed through field 'myResourceChangeListenerCacheRefresher'; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'resourceChangeListenerCacheRefresher': Unsatisfied dependency expressed through field 'myResourceVersionSvc'; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'resourceVersionSvc': Unsatisfied dependency expressed through field 'myResourceTableDao'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'IResourceTableDao' defined in ca.uhn.fhir.jpa.dao.data.IResourceTableDao defined in @EnableJpaRepositories declared on BaseConfig: Cannot create inner bean '(inner bean)#1cc680e' of type [org.springframework.orm.jpa.SharedEntityManagerCreator] while setting bean property 'entityManager'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name '(inner bean)#1cc680e': Cannot resolve reference to bean 'entityManagerFactory' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'flywayInitializer' defined in class path resource [org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration$FlywayConfiguration.class]: Invocation of init method failed; nested exception is java.lang.reflect.InvocationTargetException
        at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:185)
        at org.springframework.beans.factory.support.ConstructorResolver.instantiate(ConstructorResolver.java:653)
        ... 61 common frames omitted
Caused by: org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'ca.uhn.fhir.jpa.starter.JpaRestfulServer': Unsatisfied dependency expressed through field 'searchParamRegistry'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'searchParamRegistry': Invocation of init method failed; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'registeredResourceChangeListener': Unsatisfied dependency expressed through field 'myResourceChangeListenerCacheRefresher'; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'resourceChangeListenerCacheRefresher': Unsatisfied dependency expressed through field 'myResourceVersionSvc'; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'resourceVersionSvc': Unsatisfied dependency expressed through field 'myResourceTableDao'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'IResourceTableDao' defined in ca.uhn.fhir.jpa.dao.data.IResourceTableDao defined in @EnableJpaRepositories declared on BaseConfig: Cannot create inner bean '(inner bean)#1cc680e' of type [org.springframework.orm.jpa.SharedEntityManagerCreator] while setting bean property 'entityManager'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name '(inner bean)#1cc680e': Cannot resolve reference to bean 'entityManagerFactory' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'flywayInitializer' defined in class path resource [org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration$FlywayConfiguration.class]: Invocation of init method failed; nested exception is java.lang.reflect.InvocationTargetException
        at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:660)
        at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:640)
        at org.springframework.beans.factory.annotation.InjectionMetadata.inject(InjectionMetadata.java:119)
        at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor.postProcessProperties(AutowiredAnnotationBeanPostProcessor.java:399)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1413)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireBean(AbstractAutowireCapableBeanFactory.java:325)
        at ca.uhn.fhir.jpa.starter.Application.hapiServletRegistration(Application.java:52)
        at ca.uhn.fhir.jpa.starter.Application$$EnhancerBySpringCGLIB$$f578058d.CGLIB$hapiServletRegistration$1(<generated>)
        at ca.uhn.fhir.jpa.starter.Application$$EnhancerBySpringCGLIB$$f578058d$$FastClassBySpringCGLIB$$52babefc.invoke(<generated>)
        at org.springframework.cglib.proxy.MethodProxy.invokeSuper(MethodProxy.java:244)
        at org.springframework.context.annotation.ConfigurationClassEnhancer$BeanMethodInterceptor.intercept(ConfigurationClassEnhancer.java:331)
        at ca.uhn.fhir.jpa.starter.Application$$EnhancerBySpringCGLIB$$f578058d.hapiServletRegistration(<generated>)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
        at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.base/java.lang.reflect.Method.invoke(Method.java:568)
        at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:154)
        ... 62 common frames omitted
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'searchParamRegistry': Invocation of init method failed; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'registeredResourceChangeListener': Unsatisfied dependency expressed through field 'myResourceChangeListenerCacheRefresher'; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'resourceChangeListenerCacheRefresher': Unsatisfied dependency expressed through field 'myResourceVersionSvc'; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'resourceVersionSvc': Unsatisfied dependency expressed through field 'myResourceTableDao'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'IResourceTableDao' defined in ca.uhn.fhir.jpa.dao.data.IResourceTableDao defined in @EnableJpaRepositories declared on BaseConfig: Cannot create inner bean '(inner bean)#1cc680e' of type [org.springframework.orm.jpa.SharedEntityManagerCreator] while setting bean property 'entityManager'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name '(inner bean)#1cc680e': Cannot resolve reference to bean 'entityManagerFactory' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'flywayInitializer' defined in class path resource [org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration$FlywayConfiguration.class]: Invocation of init method failed; nested exception is java.lang.reflect.InvocationTargetException
        at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:160)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:422)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1778)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:602)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:524)
        at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:335)
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:333)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:208)
        at org.springframework.beans.factory.config.DependencyDescriptor.resolveCandidate(DependencyDescriptor.java:276)
        at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1380)
        at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:1300)
        at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:657)
        ... 78 common frames omitted
Caused by: org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'registeredResourceChangeListener': Unsatisfied dependency expressed through field 'myResourceChangeListenerCacheRefresher'; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'resourceChangeListenerCacheRefresher': Unsatisfied dependency expressed through field 'myResourceVersionSvc'; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'resourceVersionSvc': Unsatisfied dependency expressed through field 'myResourceTableDao'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'IResourceTableDao' defined in ca.uhn.fhir.jpa.dao.data.IResourceTableDao defined in @EnableJpaRepositories declared on BaseConfig: Cannot create inner bean '(inner bean)#1cc680e' of type [org.springframework.orm.jpa.SharedEntityManagerCreator] while setting bean property 'entityManager'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name '(inner bean)#1cc680e': Cannot resolve reference to bean 'entityManagerFactory' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'flywayInitializer' defined in class path resource [org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration$FlywayConfiguration.class]: Invocation of init method failed; nested exception is java.lang.reflect.InvocationTargetException
        at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:660)
        at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:640)
        at org.springframework.beans.factory.annotation.InjectionMetadata.inject(InjectionMetadata.java:119)
        at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor.postProcessProperties(AutowiredAnnotationBeanPostProcessor.java:399)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1413)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:601)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:524)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:353)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:233)
        at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveNamedBean(DefaultListableBeanFactory.java:1273)
        at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveNamedBean(DefaultListableBeanFactory.java:1234)
        at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveBean(DefaultListableBeanFactory.java:494)
        at org.springframework.beans.factory.support.DefaultListableBeanFactory.getBean(DefaultListableBeanFactory.java:349)
        at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1178)
        at ca.uhn.fhir.jpa.cache.ResourceChangeListenerCacheFactory.create(ResourceChangeListenerCacheFactory.java:34)
        at ca.uhn.fhir.jpa.cache.ResourceChangeListenerRegistryImpl.add(ResourceChangeListenerRegistryImpl.java:114)
        at ca.uhn.fhir.jpa.cache.ResourceChangeListenerRegistryImpl.registerResourceResourceChangeListener(ResourceChangeListenerRegistryImpl.java:95)
        at ca.uhn.fhir.jpa.searchparam.registry.SearchParamRegistryImpl.registerListener(SearchParamRegistryImpl.java:248)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
        at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.base/java.lang.reflect.Method.invoke(Method.java:568)
        at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:389)
        at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:333)
        at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:157)
        ... 90 common frames omitted
Caused by: org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'resourceChangeListenerCacheRefresher': Unsatisfied dependency expressed through field 'myResourceVersionSvc'; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'resourceVersionSvc': Unsatisfied dependency expressed through field 'myResourceTableDao'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'IResourceTableDao' defined in ca.uhn.fhir.jpa.dao.data.IResourceTableDao defined in @EnableJpaRepositories declared on BaseConfig: Cannot create inner bean '(inner bean)#1cc680e' of type [org.springframework.orm.jpa.SharedEntityManagerCreator] while setting bean property 'entityManager'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name '(inner bean)#1cc680e': Cannot resolve reference to bean 'entityManagerFactory' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'flywayInitializer' defined in class path resource [org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration$FlywayConfiguration.class]: Invocation of init method failed; nested exception is java.lang.reflect.InvocationTargetException
        at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:660)
        at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:640)
        at org.springframework.beans.factory.annotation.InjectionMetadata.inject(InjectionMetadata.java:119)
        at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor.postProcessProperties(AutowiredAnnotationBeanPostProcessor.java:399)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1413)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:601)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:524)
        at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:335)
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:333)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:208)
        at org.springframework.beans.factory.config.DependencyDescriptor.resolveCandidate(DependencyDescriptor.java:276)
        at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1380)
        at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:1300)
        at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:657)
        ... 114 common frames omitted
Caused by: org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'resourceVersionSvc': Unsatisfied dependency expressed through field 'myResourceTableDao'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'IResourceTableDao' defined in ca.uhn.fhir.jpa.dao.data.IResourceTableDao defined in @EnableJpaRepositories declared on BaseConfig: Cannot create inner bean '(inner bean)#1cc680e' of type [org.springframework.orm.jpa.SharedEntityManagerCreator] while setting bean property 'entityManager'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name '(inner bean)#1cc680e': Cannot resolve reference to bean 'entityManagerFactory' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'flywayInitializer' defined in class path resource [org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration$FlywayConfiguration.class]: Invocation of init method failed; nested exception is java.lang.reflect.InvocationTargetException
        at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:660)
        at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:640)
        at org.springframework.beans.factory.annotation.InjectionMetadata.inject(InjectionMetadata.java:119)
        at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor.postProcessProperties(AutowiredAnnotationBeanPostProcessor.java:399)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1413)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:601)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:524)
        at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:335)
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:333)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:208)
        at org.springframework.beans.factory.config.DependencyDescriptor.resolveCandidate(DependencyDescriptor.java:276)
        at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1380)
        at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:1300)
        at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:657)
        ... 128 common frames omitted
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'IResourceTableDao' defined in ca.uhn.fhir.jpa.dao.data.IResourceTableDao defined in @EnableJpaRepositories declared on BaseConfig: Cannot create inner bean '(inner bean)#1cc680e' of type [org.springframework.orm.jpa.SharedEntityManagerCreator] while setting bean property 'entityManager'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name '(inner bean)#1cc680e': Cannot resolve reference to bean 'entityManagerFactory' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'flywayInitializer' defined in class path resource [org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration$FlywayConfiguration.class]: Invocation of init method failed; nested exception is java.lang.reflect.InvocationTargetException
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveInnerBean(BeanDefinitionValueResolver.java:389)
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:134)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1689)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1434)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:601)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:524)
        at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:335)
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:333)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:208)
        at org.springframework.beans.factory.config.DependencyDescriptor.resolveCandidate(DependencyDescriptor.java:276)
        at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1380)
        at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:1300)
        at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.resolveFieldValue(AutowiredAnnotationBeanPostProcessor.java:657)
        ... 142 common frames omitted
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name '(inner bean)#1cc680e': Cannot resolve reference to bean 'entityManagerFactory' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'flywayInitializer' defined in class path resource [org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration$FlywayConfiguration.class]: Invocation of init method failed; nested exception is java.lang.reflect.InvocationTargetException
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:342)
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:113)
        at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:693)
        at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:510)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:1334)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1177)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:564)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:524)
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveInnerBean(BeanDefinitionValueResolver.java:374)
        ... 155 common frames omitted
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'flywayInitializer' defined in class path resource [org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration$FlywayConfiguration.class]: Invocation of init method failed; nested exception is java.lang.reflect.InvocationTargetException
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1786)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:602)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:524)
        at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:335)
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:333)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:208)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:322)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:208)
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:330)
        ... 163 common frames omitted
Caused by: java.lang.reflect.InvocationTargetException: null
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
        at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.base/java.lang.reflect.Method.invoke(Method.java:568)
        at org.springframework.boot.autoconfigure.flyway.FlywayMigrationInitializer.afterPropertiesSet(FlywayMigrationInitializer.java:70)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1845)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1782)
        ... 172 common frames omitted
Caused by: org.flywaydb.core.api.FlywayException: Found non-empty schema(s) "public" but no schema history table. Use baseline() or set baselineOnMigrate to true to initialize the schema history table.
        at org.flywaydb.core.Flyway$1.execute(Flyway.java:186)
        at org.flywaydb.core.Flyway$1.execute(Flyway.java:158)
        at org.flywaydb.core.Flyway.execute(Flyway.java:527)
        at org.flywaydb.core.Flyway.migrate(Flyway.java:158)
        ... 179 common frames omitted
ZuSe commented 2 years ago

Potential solution for now is to set:

flyway: check-location: false baselineOnMigrate: true

jkiddo commented 2 years ago

I guess the baselineOnMigrate: true should have been part of the MR yesterday. @ZuSe can you confirm that it works as intended if you add that part to the yaml and run the application on an existing 5.5.0 database?

ZuSe commented 2 years ago

confirmed

ZuSe commented 2 years ago

Thanks for the fix