KevinDougan
commented
1 year ago Can you please provide some more information detailing the steps you are taking and also provide your configuration files (yaml, properties, etc)?
Closed okongwu101 closed 5 months ago
KevinDougan
commented
1 year ago Can you please provide some more information detailing the steps you are taking and also provide your configuration files (yaml, properties, etc)?
okongwu101
commented
1 year ago Thank you for the response. The build process on the google cloud uses the Dockerfile. The datasource segment of application.yaml file is modified cos i plan using cloud hosted postgressql database. I added the 'ENV port 8080' and 'EXPOSE ${port}' commands before the last line in the Dockerfile. A copy of the files are below.
please don't mind the formatting.
Application.yaml `
management: endpoints: web: exposure: include: "health,prometheus" spring: main: allow-circular-references: true
flyway: enabled: false check-location: false baselineOnMigrate: true datasource: url: jdbc:postgresql:*/hapi_dstu3 username: ** password: * driverClassName: org.postgresql.Driver max-active: 20
# database connection pool size
hikari:
maximum-pool-size: 10jpa: properties: hibernate.format_sql: false hibernate.show_sql: false
#If using H2, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect
#If using postgres, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirPostgres94Dialect
hibernate.dialect: ca.uhn.fhir.jpa.model.dialect.HapiFhirPostgres94Dialect hibernate.search.enabled: falsebatch: job: enabled: false hapi: fhir:
openapi_enabled: true
### This is the FHIR version. Choose between, DSTU2, DSTU3, R4 or R5
fhir_version: R4
### enable to use the ApacheProxyAddressStrategy which uses X-Forwarded-* headers
### to determine the FHIR server address
# use_apache_address_strategy: false
### forces the use of the https:// protocol for the returned server address.
### alternatively, it may be set using the X-Forwarded-Proto header.
# use_apache_address_strategy_https: false
### enable to set the Server URL
# server_address: http://hapi.fhir.org/baseR4
# defer_indexing_for_codesystems_of_size: 101
# install_transitive_ig_dependencies: true
# implementationguides:
### example from registry (packages.fhir.org)
# swiss:
# name: swiss.mednet.fhir
# version: 0.8.0
# example not from registry
# ips_1_0_0:
# url: https://build.fhir.org/ig/HL7/fhir-ips/package.tgz
# name: hl7.fhir.uv.ips
# version: 1.0.0
# supported_resource_types:
# - Patient
# - Observation
##################################################
# Allowed Bundle Types for persistence (defaults are: COLLECTION,DOCUMENT,MESSAGE)
##################################################
# allowed_bundle_types: COLLECTION,DOCUMENT,MESSAGE,TRANSACTION,TRANSACTIONRESPONSE,BATCH,BATCHRESPONSE,HISTORY,SEARCHSET
# allow_cascading_deletes: true
# allow_contains_searches: true
# allow_external_references: true
# allow_multiple_delete: true
# allow_override_default_search_params: true
# auto_create_placeholder_reference_targets: false
# cql_enabled: true
# default_encoding: JSON
# default_pretty_print: true
# default_page_size: 20
# delete_expunge_enabled: true
# enable_repository_validating_interceptor: true
# enable_index_missing_fields: false
# enable_index_of_type: true
# enable_index_contained_resource: false
### !!Extended Lucene/Elasticsearch Indexing is still a experimental feature, expect some features (e.g. _total=accurate) to not work as expected!!
### more information here: https://hapifhir.io/hapi-fhir/docs/server_jpa/elastic.html
advanced_lucene_indexing: false
bulk_export_enabled: false
bulk_import_enabled: false
# enforce_referential_integrity_on_delete: false
# This is an experimental feature, and does not fully support _total and other FHIR features.
# enforce_referential_integrity_on_delete: false
# enforce_referential_integrity_on_write: false
# etag_support_enabled: true
# expunge_enabled: true
# client_id_strategy: ALPHANUMERIC
# fhirpath_interceptor_enabled: false
# filter_search_enabled: true
# graphql_enabled: true
# narrative_enabled: true
# mdm_enabled: true
# local_base_urls:
# - https://hapi.fhir.org/baseR4
mdm_enabled: false
# partitioning:
# allow_references_across_partitions: false
# partitioning_include_in_search_hashes: false
cors:
allow_Credentials: true
# These are allowed_origin patterns, see: https://docs.spring.io/spring-framework/docs/current/javadoc-api/org/springframework/web/cors/CorsConfiguration.html#setAllowedOriginPatterns-java.util.List-
allowed_origin:
- '*'
# Search coordinator thread pool sizes
search-coord-core-pool-size: 20
search-coord-max-pool-size: 100
search-coord-queue-capacity: 200
# Threadpool size for BATCH'ed GETs in a bundle.
# bundle_batch_pool_size: 10
# bundle_batch_pool_max_size: 50
# logger:
# error_format: 'ERROR - ${requestVerb} ${requestUrl}'
# format: >-
# Path[${servletPath}] Source[${requestHeader.x-forwarded-for}]
# Operation[${operationType} ${operationName} ${idOrResourceName}]
# UA[${requestHeader.user-agent}] Params[${requestParameters}]
# ResponseEncoding[${responseEncodingNoDefault}]
# log_exceptions: true
# name: fhirtest.access
# max_binary_size: 104857600
# max_page_size: 200
# retain_cached_searches_mins: 60
# reuse_cached_search_results_millis: 60000
tester:
home:
name: Local Tester
server_address: 'http://localhost:8080/fhir'
refuse_to_fetch_third_party_urls: false
fhir_version: R4
global:
name: Global Tester
server_address: "http://hapi.fhir.org/baseR4"
refuse_to_fetch_third_party_urls: false
fhir_version: R4
# validation:
# requests_enabled: true
# responses_enabled: true
# binary_storage_enabled: true
inline_resource_storage_below_size: 4000`
Dockerfile ` FROM maven:3.8-openjdk-17-slim as build-hapi WORKDIR /tmp/hapi-fhir-jpaserver-starter
ARG OPENTELEMETRY_JAVA_AGENT_VERSION=1.17.0 RUN curl -LSsO https://github.com/open-telemetry/opentelemetry-java-instrumentation/releases/download/v${OPENTELEMETRY_JAVA_AGENT_VERSION}/opentelemetry-javaagent.jar
COPY pom.xml . COPY server.xml . RUN mvn -ntp dependency:go-offline
COPY src/ /tmp/hapi-fhir-jpaserver-starter/src/ RUN mvn clean install -DskipTests -Djdk.lang.Process.launchMechanism=vfork
FROM build-hapi AS build-distroless RUN mvn package spring-boot:repackage -Pboot RUN mkdir /app && cp /tmp/hapi-fhir-jpaserver-starter/target/ROOT.war /app/main.war
########### bitnami tomcat version is suitable for debugging and comes with a shell
########### it can be built using eg. docker build --target tomcat .
FROM bitnami/tomcat:9.0 as tomcat
RUN rm -rf /opt/bitnami/tomcat/webapps/ROOT && \ mkdir -p /opt/bitnami/hapi/data/hapi/lucenefiles && \ chmod 775 /opt/bitnami/hapi/data/hapi/lucenefiles
USER root RUN mkdir -p /target && chown -R 1001:1001 target USER 1001
COPY --chown=1001:1001 catalina.properties /opt/bitnami/tomcat/conf/catalina.properties COPY --chown=1001:1001 server.xml /opt/bitnami/tomcat/conf/server.xml COPY --from=build-hapi --chown=1001:1001 /tmp/hapi-fhir-jpaserver-starter/target/ROOT.war /opt/bitnami/tomcat/webapps/ROOT.war COPY --from=build-hapi --chown=1001:1001 /tmp/hapi-fhir-jpaserver-starter/opentelemetry-javaagent.jar /app
ENV ALLOW_EMPTY_PASSWORD=yes
########### distroless brings focus on security and runs on plain spring boot - this is the default image FROM gcr.io/distroless/java17-debian11:nonroot as default
USER 65532:65532 WORKDIR /app
COPY --chown=nonroot:nonroot --from=build-distroless /app /app COPY --chown=nonroot:nonroot --from=build-hapi /tmp/hapi-fhir-jpaserver-starter/opentelemetry-javaagent.jar /app
ENV port 8080 EXPOSE ${port}
CMD ["/app/main.war"] `
jkiddo
commented
5 months ago Closing as stale
I have been trying to build and deploy the hapi project using google cloud build and run. The build process seem to complete successfully, but the container does not start. I get this error:
The user-provided container failed to start and listen on the port defined provided by the PORT=8080 environment variable.
Where and how do i modify the hapi-project code to remove this error? I have done everything i can in docker-compose.yml, dockerfile and applicationproperties files. Please i need help. Thanks in advance.