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happykhan / BRIG

BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data.
http://sourceforge.net/projects/brig/
GNU General Public License v3.0
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SYS_ERROR:org.xml.sax.SAXException: value for 'proportionOfThickness' attribute in featureRange element must be between 0 and 1 in null at line 1192 column 147 #16

Open ruchi19flowchart opened 4 years ago

ruchi19flowchart commented 4 years ago

Your query File: /Data/NGS_1165_Circos_genomes/genome/Bacillus_paralicheniformis.fna

Multi-FASTA detected, Rewriting headers

Initializing XML output..

Running BLAST... Sequence length: 3976743 Spaced1Bacillus_paralicheniformis.fna.nin exists, skipping .. Bacillus_paralicheni... exists, skipping .. Spaced1Bacillus_paralicheniformis.fna.nin exists, skipping .. Bacillus_paralicheni... exists, skipping .. Spaced1Bacillus_paralicheniformis.fna.nin exists, skipping .. G1_gene.fnaVsSpaced1... exists, skipping .. Spaced1Bacillus_paralicheniformis.fna.nin exists, skipping .. Bacillus_licheniform... exists, skipping .. Spaced1Bacillus_paralicheniformis.fna.nin exists, skipping .. Bacillus_amyloliquef... exists, skipping ..

Parsing BLAST Results...

Rendering CGVIEW image... java -Xmx1500m -jar cgview/cgview.jar -f jpg -i /Data/NGS_1165_Circos_genomes/genome/scratch/Bacillus_paralicheniformis.fna.xml -o /Data/NGS_1165_Circos_genomes/genome/Bacillus_paralicheniformis.fna.jpg Parsing XML input. SYS_ERROR:org.xml.sax.SAXException: value for 'proportionOfThickness' attribute in featureRange element must be between 0 and 1 in null at line 1192 column 147 SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewFactory.handleFeatureRange(CgviewFactory.java:2215) SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewFactory.startElement(CgviewFactory.java:516) SYS_ERROR: at org.apache.xerces.parsers.AbstractSAXParser.startElement(Unknown Source) SYS_ERROR: at org.apache.xerces.parsers.AbstractXMLDocumentParser.emptyElement(Unknown Source) SYS_ERROR: at org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanStartElement(Unknown Source) SYS_ERROR: at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source) SYS_ERROR: at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) SYS_ERROR: at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) SYS_ERROR: at org.apache.xerces.parsers.DTDConfiguration.parse(Unknown Source) SYS_ERROR: at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) SYS_ERROR: at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source) SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewFactory.createCgviewFromFile(CgviewFactory.java:300) SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewIO.main(CgviewIO.java:1056) SYS_ERROR:The following error occurred: org.xml.sax.SAXException: value for 'proportionOfThickness' attribute in featureRange element must be between 0 and 1 in null at line 1192 column 147 Done.

This is what I'm getting while plotting circular plot. Need help

dfl5440 commented 5 months ago

Did you ever figure this out??