Open zararafaque opened 3 years ago
Same problem here, I imagine it is because i'm trying to run it with 30 genomes. I tried to run it with "java -Xmx2000m jar BRIG.jar" in case it is a memory issue but seems to use "java -Xmx1500m" anyway at the CGVIEW rendering stage. Did you get to know the problem? Thanks!
Running BLAST... Sequence length: 5246185 makeblastdb -dbtype nucl -in D:\scratch\Spaced0NA_114.fna Error: mdb_env_open: There is not enough space on the disk.
11890_UEC11.fastaVsS... exists, skipping .. makeblastdb -dbtype nucl -in D:\scratch\Spaced0NA_114.fna Error: mdb_env_open: There is not enough space on the disk.
blastn -outfmt 6 -query E:\NGS\contigs\20171031_Andrews1\contigs\11891_UEC31.fasta -db D:\scratch\Spaced0NA_114.fna -out D:\scratch\11891_UEC31.fastaVsSpaced0NA_114.fna.tab -task blastn BLAST Database error: No alias or index file found for nucleotide database [D:\scratch\Spaced0NA_114.fna] in search path [C:\Users\Zara Rafaque\Downloads\BRIG-0.95-dist\BRIG-0.95-dist;;]
Parsing BLAST Results...
Rendering CGVIEW image... java -Xmx1500m -jar cgview\cgview.jar -f jpg -i D:\scratch\NA_114.fna.xml -o D:\NA_114.fna.jpg Parsing XML input. Drawing features.... Positioning and drawing 0 labels.......................... 0 labels were removed. Drawing tick marks. Drawing legends. The map has been drawn. Writing picture to D:\NA_114.fna.jpg Done.