SyntaxError

[mdidish]

Dear, Thank you for you nice tool. However I have a syntax error at line 799

write_to_file('''<text text-anchor="''' + text_anchor + '''''''" font-family="Arial" x="''' + str(x_value_chr_label) + '''" y="''' + str(y_value_chr_label) + '''" font-size="7" >Chr''' + str(region[0]) + ''': ''' + str(f"{region[1]:,}") + '''-''' + str(f"{region[2]:,}") + '''</text>''')

I don't know python so i don't know how to avoid this problem. I tried to replace

"''' + text_anchor + '''''''"

by

"''' + text_anchor + '''"

but without success.

Thank you for your help.

Edit: format modification

[harbourlab]

Hi! Can you copy paste the exact line of code you are using to execute SparK? Thanks!

[mdidish]

I just execute this test line (all files are in the same folder) :

python ./SparK.py -pr chr12:6520512-6640512 -cf WTpalm3.bdg WTbsa1.bdg

Edit: On an other computer, with same files, I have no error. But on the server, where I have all my bdg files, I have this error, even after forced python3.7 use instead python207

[harbourlab]

Thanks! So you are getting a good output on the computer where it works?

Also, what does the error message say exactly on the computer where it does not work?

[mdidish]

I'm currently try different parameters on the computer where it works, it sounds very good!

Concerning the error message, I don't have more information than that:

File "/home/mdidish/ATAC/spark/SparK.py", line 799
    write_to_file('''<text text-anchor="''' + text_anchor + ''''''" font-family="Arial" x="''' + str(x_value_chr_label) + '''" y="''' + str(y_value_chr_label) + '''" font-size="7" >Chr''' + str(region[0]) + ''': ''' + str(f"{region[1]:,}") + '''-''' + str(f"{region[2]:,}") + '''</text>''')
                                                                                     ^

[harbourlab]

Glad it works for you! I think that somehow its a python version issue, as it runs fine on your other machine. If you have any more problems let me know!