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hardingnj / xpclr

Code to compute the XP-CLR statistic to infer natural selection
MIT License
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Unable to detect known sweep regions #63

Closed sandipmkale closed 4 years ago

sandipmkale commented 4 years ago

Hello,

I have a naive question. I am working on wheat and there are known genes for plant height. There is clear structure, however, I could not identify these loci using XP-CLR. Can you please explain what could be the reason?

Thanks and regards

Sandip

hardingnj commented 4 years ago

Generally this repo is for technical queries about the implementation- there is a wide literature on the utility of selection methods.

Some reasons could include: