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hardingnj / xpclr

Code to compute the XP-CLR statistic to infer natural selection
MIT License
85 stars 26 forks source link

No permission to write in the specified directory #75

Open fxfish opened 2 years ago

fxfish commented 2 years ago

Hi, Thank you for the nice software. I have some questions.

(1) I got the error/traceback messages below. Can I set another directory to write in.

Traceback (most recent call last): File "/home/xiu/miniconda3/envs/rad/bin/xpclr", line 196, in main() File "/home/xiu/miniconda3/envs/rad/bin/xpclr", line 87, in main assert os.access(outdir, os.W_OK), \ AssertionError: No permission to write in the specified directory:

(2) Can I get the recombination rate = total cM of the genetic map/total bases, or additional cM/100

(3) Can I set --chr with mixed letter and digit, such as Chr25. It seems it is not recognized.

All the best,

Xiu

original10012 commented 1 year ago

@fxfish 您好，我想问一下，您这个几个问题得到解决了吗，最近我也遇到了相似的问题，如果可能，希望您能够为我解答一下。谢谢1

fxfish commented 1 year ago

我没用这个方法了，用了XP-EHH和FST两种方法

original10012 commented 1 year ago

好的吧，谢谢师兄的回答

在 2023-01-26 21:28:35，"fxfish" @.***> 写道：

我没用这个方法了，用了XP-EHH和FST两种方法

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: @.***>

caiisen commented 1 year ago

@fxfish 您好，我想问一下，您这个几个问题得到解决了吗，最近我也遇到了相似的问题，如果可能，希望您能够为我解答一下。谢谢1@fxfish 您好，我想问一下，您这个几个问题得到解决了吗，最近我也遇到了相似的问题，如果可能，希望您能够为我解答一下。谢谢1

58 这里提供的方法可行，简单来说就是-O filename改成-O ./filename