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hariszaf / pema

PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes
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Describe formally the pema output #38

Open hariszaf opened 2 years ago

hariszaf commented 2 years ago

This is about describing the PEMA outputs in a formal way, so that they are more machine-interoperable.

Similarly to the parameters.tsv file and its structured format (see issue #35 ) we need to do so with the pema output.

In the PEMA's output files file we had started working on it.

We shall go for it step-by-step. @cpavloud feel free to contribute :stuck_out_tongue:

hariszaf commented 2 years ago

@marc-portier Marc i just started working this file here.

Would you like to have a look from time to time and share your thoughts if i m doing well or something is going terribly wrong? :sweat_smile:

kmexter commented 1 year ago

Marc and @kmexter will look at the current situation and make suggestions for improvements (probably not until july), which @hariszaf will do if they are not too complex (which is unlikely). This will then need to be included in the next release.