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hariszaf / pema

PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes
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alternative database for COI marker gene #41

Closed hariszaf closed 2 years ago

hariszaf commented 2 years ago

A new db mostly for metazoan was recently published: repo publication

consider training crest or rdp with that and integrate it the pema workfow.

@cpavloud check and share your thougts! :sweat_smile:

cpavloud commented 2 years ago

It would be great if in the publication they did some kind of comparison with other databases. I.e. if we have a mock community and we classify it based on e.g. MIDORI and MetaCOXI, which are the differences, which one is "better" etc. Since they haven't done something like that, I wouldn't prioritize adding MetaCOXI in PEMA.

hariszaf commented 2 years ago

Ok nice.