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hariszaf / pema

PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes
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extended final table #53

Open kmexter opened 1 year ago

kmexter commented 1 year ago

In the next release if PEMA, could the extended final table that is produced when asked for in the parameter files 1) be called extendedFinalTable.tsv to be the same as the finalTable.tsv (and to correct the current spelling mistake in the word "extened") 2) be put in the same place as the finalTable.tsv in the outputs - so top level directory, not lower down

This is to make it so that the ARMS workflow in the tesseract can look in just one place to get this file, rather than a slightly different place depending on the parameters set by tye user

hariszaf commented 1 year ago

Please remember that based on the classifier, the final_table.tsv file can be found in different levels inside the 7.mainOutput folder.