hariszaf / pema

PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes
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time consuming preprocessing #63

Open hariszaf opened 11 months ago

hariszaf commented 11 months ago

It has been observed that the current setup (we'll call it original approach), can be time consuming. In cases of hundreds of samples this can be a limiting factor for pema.

An alternative would be to try the fastp tool (fastp preprocessing approach).