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hariszaf / pema

PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes
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Changes in parameters file, READme, and output folders for v.2.1.5 #64

Closed savvas-paragkamian closed 11 months ago

savvas-paragkamian commented 11 months ago

This PR contains changes of version v2.1.5 of PEMA regarding the parameters.tsv, initialize.bds, README.md files.

The main change is the parameters file delimiter which is switched from \t to =. Hope this doesn't create any other conflicts.

Log of changes:

fcb21a6 (HEAD -> v.2.1.5, origin/v.2.1.5) replace 2.1.4 with 2.1.5 where applicable
78a6b5b add info of 2.1.5 version
11592f2 typo in folder creation for bayesHammer
68659bf change the line.split for the parameters file to = from \t
4c58ed4 change the output folder names
c134753 change the order of each parameter help info, first is the parameter value pair and then the help info
4c6ac14 change the assign symbol from \t to = to avoid confusion. also replace the #= to ## across the file