harmslab epistasis issues

harmslab / epistasis

A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.

http://epistasis.readthedocs.io/

The Unlicense

33 stars 11 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

error bars

#56 Admire7494 opened 6 months ago
0
use of numpy.int causes an error with newer versions of numpy

#55 mgalardini opened 8 months ago
0
epistasis models which take into account the distances between mutated positions.

#54 adalisan opened 2 years ago
0
Data type on phenotype

#53 Shinezhuxin opened 2 years ago
1
caught change not committed

#52 harmsm closed 3 years ago
0
fixed broken set_params call in latest version of sklearn

#51 harmsm closed 3 years ago
0
Fix setup.py bug and add github actions for testing+publishing

#50 Zsailer closed 4 years ago
0
requires numpy before installing

#49 Zsailer opened 4 years ago
0
About non linear simulation

#48 juychen opened 4 years ago
0
model.labels now spits out user-specified site_labels

#47 harmsm closed 5 years ago
0
predictions to df

#46 Zsailer closed 5 years ago
0
generate binary genotype again in genotypes_to_X

#45 Zsailer closed 5 years ago
0
Use encoding table in GPMap to build coeffs.

#44 Zsailer closed 5 years ago
0
Inheritance diagram.

#43 Zsailer opened 5 years ago
3
Slack app

#42 jbloom closed 5 years ago
2
Change how spline coefficients are returned to spline epistasis models

#41 caelanradford closed 5 years ago
6
relax requirements to minimal dependencies

#40 Zsailer closed 5 years ago
1
Better epistasis mapping

#39 Zsailer closed 5 years ago
0
requirements for installation?

#38 jbloom closed 5 years ago
2
Add documentation about X matrix

#37 Zsailer closed 6 years ago
0
Predictions to df, CSV, Excel, etc.

#36 Zsailer closed 5 years ago
1
add validate module

#35 Zsailer closed 6 years ago
0
Refactored Classifier module and allow for custom sklearn classifiers

#34 Zsailer closed 6 years ago
0
new setup.py

#33 Zsailer closed 6 years ago
0
add sorter method to spline

#32 Zsailer closed 6 years ago
0
Add Spline and simplify transforms

#31 Zsailer closed 6 years ago
0
Add elastic net model.

#30 Zsailer closed 6 years ago
0
Add Ridge model.

#29 Zsailer closed 6 years ago
0
Refactor API for Pipelines

#28 Zsailer closed 6 years ago
0
Add a Pipeline class

#27 Zsailer closed 6 years ago
0
Ensemble model

#26 Zsailer closed 6 years ago
1
Methods to estimate the contribution of model piece

#25 Zsailer closed 6 years ago
0
Updating docs and changes to go with it

#24 Zsailer closed 6 years ago
0
Switch to LMFIT for nonlinear models

#23 Zsailer closed 6 years ago
0
Updating fixed model

#22 Zsailer closed 6 years ago
0
Make mixed model more flexible.

#21 Zsailer closed 6 years ago
0
Adding Lasso model

#20 Zsailer closed 6 years ago
0
Sample weight

#19 Zsailer closed 6 years ago
0
Changes to Bayesian sampler object

#18 Zsailer closed 6 years ago
0
add model_specs attribute to models

#17 Zsailer closed 7 years ago
0
Lightweight Bayesian sampler

#16 Zsailer closed 7 years ago
1
Standardized X matrix, switched to pytest, added tests, and added docs

#15 Zsailer closed 7 years ago
2
Refactor models, add tests, add classifier, add lnlikelihoods, and store model predictions

#14 Zsailer closed 7 years ago
1
add module for estimating uncertainty

#13 Zsailer closed 7 years ago
0
Follow scikit-learn API and add more documentation #11

#12 Zsailer closed 7 years ago
0
Follow scikit-learn API and add more documentation

#11 Zsailer closed 7 years ago
0
Couple nonlinear transform model with linear epistasis model

#10 Zsailer closed 7 years ago
1
Add a Gitter chat badge to README.md

#9 gitter-badger closed 8 years ago
0
symbolic math module for nonlinear function manipulation

#8 Zsailer closed 7 years ago
0
easier epistasis plotting, interactive widget

#7 Zsailer closed 8 years ago
0