issues
search
harmslab
/
topiary
Python framework for doing ancestral sequence reconstruction
MIT License
31
stars
7
forks
source link
stitched together final pipeline architecture before submission
#4
Closed
harmsm
closed
2 years ago
harmsm
commented
2 years ago
Added some unit testing
Added code to sanitize and check topiary dataframes
OTT columns are now strings with format ottNUMBER
Improved reverse blasting
can now reverse blast on NCBI
cleaned up how reverse blasts are done -- standard data frame structure
updated reverse blast calling code to be simpler and more robust
now catches more OTT errors and throws user-interpretable errors
switched warnings.warn calls to stdout prints because jupyter often hides warnings silently
split concept of reverse blast call and nicknames. users can now specify nicknames
updated fasta read/load capabilities.