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harmslab / topiary

Python framework for doing ancestral sequence reconstruction
MIT License
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Running topiary for species that are not on NCBI #41

Open cyhkim opened 1 year ago

cyhkim commented 1 year ago

Hi, thank you for this cool software for ASR!

I was wondering if there is a way to use this program for sequences from species that are not deposited on NCBI?

I am getting the following error in the topiary-seed-to-alignment process.

RuntimeError:
Could not download proteomes from the NCBI assemblies database
for all key species in the seed dataframe. Proteomes are required
for reciprocal BLAST. Please check the spelling of your species
and/or select species with avaiable proteomes. The species that
raised errors are: