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harmslab
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topiary
Python framework for doing ancestral sequence reconstruction
MIT License
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bug fixing
#46
Open
harmsm
opened
3 months ago
harmsm
commented
3 months ago
Removed Biopython blast to avoid deprecation
Code clean up, keeping up with deprecations in upcoming python release
Fixed bug that pulled inappropriate proteome down from NCBI if many proteomes were found.
Fixed tree api to work with toytree 2.0.x and pinned version in requirements.txt
Pinned on numpy < 2.0 to avoid bug in toyplot