harmsm
commented
3 months ago - Removed Biopython blast to avoid deprecation
- Code clean up, keeping up with deprecations in upcoming python release
- Fixed bug that pulled inappropriate proteome down from NCBI if many proteomes were found.
- Fixed tree api to work with toytree 2.0.x and pinned version in requirements.txt
- Pinned on numpy < 2.0 to avoid bug in toyplot